Results 81 - 100 of 590 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28982 | 5' | -53 | NC_006146.1 | + | 19797 | 0.66 | 0.984764 |
Target: 5'- cCCGGgCUgccgGGGUCCCuccGGCUGgccuGGGACCc -3' miRNA: 3'- -GGCC-GG----UCCGGGGua-UUGAU----UUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 19887 | 0.69 | 0.920189 |
Target: 5'- gCCGGCCggaGGGaCCCCGgcaGCccgGGAGAgCCg -3' miRNA: 3'- -GGCCGG---UCC-GGGGUau-UGa--UUUCU-GG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 20066 | 0.76 | 0.602651 |
Target: 5'- uCCGGCC-GGCCUgGUGGacccgAGAGGCCg -3' miRNA: 3'- -GGCCGGuCCGGGgUAUUga---UUUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 20176 | 0.7 | 0.882022 |
Target: 5'- gCCGGCCugauGGaCCCgGUGgggagacaaGCUGAgggGGGCCg -3' miRNA: 3'- -GGCCGGu---CC-GGGgUAU---------UGAUU---UCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 20210 | 0.69 | 0.931 |
Target: 5'- -aGGCCAGGCCCUccgucCUcccuGGCCa -3' miRNA: 3'- ggCCGGUCCGGGGuauu-GAuuu-CUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 20251 | 0.67 | 0.973686 |
Target: 5'- cCCGGCCaccccAGGCCcguCCAgggggGACUuuagguGACCc -3' miRNA: 3'- -GGCCGG-----UCCGG---GGUa----UUGAuuu---CUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 21187 | 0.67 | 0.967923 |
Target: 5'- uCCaGGcCCGGGCCCCcagguCUc-GGGCCa -3' miRNA: 3'- -GG-CC-GGUCCGGGGuauu-GAuuUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 21231 | 0.69 | 0.936044 |
Target: 5'- -aGGCCugGGGCCUCGgagGGCcugGAGGGCUa -3' miRNA: 3'- ggCCGG--UCCGGGGUa--UUGa--UUUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 21772 | 0.67 | 0.966671 |
Target: 5'- -gGGCCugAGGCCCaggggcgagggGACUGAggcGGGCCu -3' miRNA: 3'- ggCCGG--UCCGGGgua--------UUGAUU---UCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 21816 | 0.66 | 0.98647 |
Target: 5'- -aGGCaGGGCcuguagCCCGUGACUcugGAGGACg -3' miRNA: 3'- ggCCGgUCCG------GGGUAUUGA---UUUCUGg -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 21838 | 0.75 | 0.664361 |
Target: 5'- cCCGGCCcucgAGGCCUCAcAGCcc-AGGCCa -3' miRNA: 3'- -GGCCGG----UCCGGGGUaUUGauuUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 21881 | 0.68 | 0.945408 |
Target: 5'- -gGGCCugaaAGGCCCCGgcgcCUGGcucauguguccAGACCg -3' miRNA: 3'- ggCCGG----UCCGGGGUauu-GAUU-----------UCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 21881 | 1.13 | 0.00351 |
Target: 5'- cCCGGCCAGGCCCCAUAACUAAAGACCc -3' miRNA: 3'- -GGCCGGUCCGGGGUAUUGAUUUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 22044 | 0.69 | 0.920189 |
Target: 5'- gUGGCCuGGCCUg--GGCUGuGAGGCCu -3' miRNA: 3'- gGCCGGuCCGGGguaUUGAU-UUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 22097 | 0.68 | 0.953824 |
Target: 5'- -gGGCgAGGCUggGUGGCUGGgcAGGCCg -3' miRNA: 3'- ggCCGgUCCGGggUAUUGAUU--UCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 22154 | 0.66 | 0.978659 |
Target: 5'- gCUGGUCucgcuugcuGGCCCCAaUGGCcgcGGGCCu -3' miRNA: 3'- -GGCCGGu--------CCGGGGU-AUUGauuUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 22219 | 0.68 | 0.953824 |
Target: 5'- gUCGGCCuAGGCCCgGgGAgUGGAGGg- -3' miRNA: 3'- -GGCCGG-UCCGGGgUaUUgAUUUCUgg -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 22615 | 0.66 | 0.984764 |
Target: 5'- -gGGCCcaGGGCCCCuaguccagagGACgGAGGAgCa -3' miRNA: 3'- ggCCGG--UCCGGGGua--------UUGaUUUCUgG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 22633 | 0.66 | 0.984764 |
Target: 5'- gCGGCUgaacccgaggAGGCgCCCGgAGC--GAGGCCg -3' miRNA: 3'- gGCCGG----------UCCG-GGGUaUUGauUUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 22692 | 0.68 | 0.940845 |
Target: 5'- cCCGGCagcccggguGGCCCCA------GAGGCCa -3' miRNA: 3'- -GGCCGgu-------CCGGGGUauugauUUCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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