miRNA display CGI


Results 141 - 160 of 590 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28982 5' -53 NC_006146.1 + 28561 0.67 0.960964
Target:  5'- cCCgGGCCuAGGCcgacucucugacuCCCAgAGCUAccccAAGGCCa -3'
miRNA:   3'- -GG-CCGG-UCCG-------------GGGUaUUGAU----UUCUGG- -5'
28982 5' -53 NC_006146.1 + 28771 0.66 0.984764
Target:  5'- -gGGCCcaGGGCCCCuaguccagagGACgGAGGAgCa -3'
miRNA:   3'- ggCCGG--UCCGGGGua--------UUGaUUUCUgG- -5'
28982 5' -53 NC_006146.1 + 28789 0.66 0.984764
Target:  5'- gCGGCUgaacccgaggAGGCgCCCGgAGC--GAGGCCg -3'
miRNA:   3'- gGCCGG----------UCCG-GGGUaUUGauUUCUGG- -5'
28982 5' -53 NC_006146.1 + 28848 0.68 0.940845
Target:  5'- cCCGGCagcccggguGGCCCCA------GAGGCCa -3'
miRNA:   3'- -GGCCGgu-------CCGGGGUauugauUUCUGG- -5'
28982 5' -53 NC_006146.1 + 28952 0.67 0.970907
Target:  5'- cCCGGCCAGaGacucuCCCucgcgGAC-AGGGGCCu -3'
miRNA:   3'- -GGCCGGUC-Cg----GGGua---UUGaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 29031 0.66 0.984764
Target:  5'- cCCGGgCUgccgGGGUCCCuccGGCUGgccuGGGACCc -3'
miRNA:   3'- -GGCC-GG----UCCGGGGua-UUGAU----UUCUGG- -5'
28982 5' -53 NC_006146.1 + 29120 0.69 0.920189
Target:  5'- gCCGGCCggaGGGaCCCCGgcaGCccgGGAGAgCCg -3'
miRNA:   3'- -GGCCGG---UCC-GGGGUau-UGa--UUUCU-GG- -5'
28982 5' -53 NC_006146.1 + 29300 0.76 0.602651
Target:  5'- uCCGGCC-GGCCUgGUGGacccgAGAGGCCg -3'
miRNA:   3'- -GGCCGGuCCGGGgUAUUga---UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 29409 0.7 0.874853
Target:  5'- gCCGGCCugauGGaCCCgGUGgggagacaGCUGAgggGGGCCg -3'
miRNA:   3'- -GGCCGGu---CC-GGGgUAU--------UGAUU---UCUGG- -5'
28982 5' -53 NC_006146.1 + 29444 0.69 0.931
Target:  5'- -aGGCCAGGCCCUccgucCUcccuGGCCa -3'
miRNA:   3'- ggCCGGUCCGGGGuauu-GAuuu-CUGG- -5'
28982 5' -53 NC_006146.1 + 29485 0.67 0.973686
Target:  5'- cCCGGCCaccccAGGCCcguCCAgggggGACUuuagguGACCc -3'
miRNA:   3'- -GGCCGG-----UCCGG---GGUa----UUGAuuu---CUGG- -5'
28982 5' -53 NC_006146.1 + 32032 0.7 0.901528
Target:  5'- gCGGCCaccauacGGGCCCUgGUGGCgcgGGGGGCUg -3'
miRNA:   3'- gGCCGG-------UCCGGGG-UAUUGa--UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 33285 0.71 0.867464
Target:  5'- cCCGGCU--GCCCCAgAGCcgcAGGGCCg -3'
miRNA:   3'- -GGCCGGucCGGGGUaUUGau-UUCUGG- -5'
28982 5' -53 NC_006146.1 + 33530 0.67 0.970907
Target:  5'- cCCGGCU--GCCCCGgAGCacccGGACCc -3'
miRNA:   3'- -GGCCGGucCGGGGUaUUGauu-UCUGG- -5'
28982 5' -53 NC_006146.1 + 33715 0.66 0.982899
Target:  5'- cCCGGCCuacCCCCGUu-CUGGAGcuCCu -3'
miRNA:   3'- -GGCCGGuccGGGGUAuuGAUUUCu-GG- -5'
28982 5' -53 NC_006146.1 + 33731 0.66 0.986307
Target:  5'- -gGGCCAGGCaagccgggcacaaCCUAgggagGGAGGCCg -3'
miRNA:   3'- ggCCGGUCCG-------------GGGUauugaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 33922 0.66 0.98647
Target:  5'- aCCGGaCCGGaggaGCUCCAgAACggggguAGGCCg -3'
miRNA:   3'- -GGCC-GGUC----CGGGGUaUUGauu---UCUGG- -5'
28982 5' -53 NC_006146.1 + 34057 0.85 0.20364
Target:  5'- gCCGGCCggGGGUCCCGUGGCacGGGGCCg -3'
miRNA:   3'- -GGCCGG--UCCGGGGUAUUGauUUCUGG- -5'
28982 5' -53 NC_006146.1 + 34079 0.73 0.744802
Target:  5'- -aGGCCGGGCacaCCCcgGGgaGGAGGCCg -3'
miRNA:   3'- ggCCGGUCCG---GGGuaUUgaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 34140 0.67 0.974742
Target:  5'- gCGGCCGGGCCUCccggAGCcccggcgaggguggGGGGugCg -3'
miRNA:   3'- gGCCGGUCCGGGGua--UUGa-------------UUUCugG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.