miRNA display CGI


Results 41 - 60 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28982 5' -53 NC_006146.1 + 164689 0.68 0.949733
Target:  5'- -gGGCCaugGGGUCCCuuUGGCccAGGGCCa -3'
miRNA:   3'- ggCCGG---UCCGGGGu-AUUGauUUCUGG- -5'
28982 5' -53 NC_006146.1 + 164497 0.76 0.571989
Target:  5'- -gGGCCAaagGGaCCCCAUGGCccaaGAGGACCg -3'
miRNA:   3'- ggCCGGU---CC-GGGGUAUUGa---UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 164493 0.68 0.949733
Target:  5'- aCGGCaguGGCCCCG--GC---GGACCu -3'
miRNA:   3'- gGCCGgu-CCGGGGUauUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 164446 0.7 0.881315
Target:  5'- -gGGCCgugguuguuguugGGGCCCCAUGGaccccAGGGCCc -3'
miRNA:   3'- ggCCGG-------------UCCGGGGUAUUgau--UUCUGG- -5'
28982 5' -53 NC_006146.1 + 164439 0.66 0.978659
Target:  5'- gUGGCCcaccAGGCCCCAcugaugguggUAACaau-GGCCc -3'
miRNA:   3'- gGCCGG----UCCGGGGU----------AUUGauuuCUGG- -5'
28982 5' -53 NC_006146.1 + 163983 0.68 0.945408
Target:  5'- -aGGcCCAGGCUgCAUAcuaACUAGAGgaugGCCu -3'
miRNA:   3'- ggCC-GGUCCGGgGUAU---UGAUUUC----UGG- -5'
28982 5' -53 NC_006146.1 + 163402 0.66 0.980867
Target:  5'- aCGGCCugcccGGCUCCu---CUGAGGGgCa -3'
miRNA:   3'- gGCCGGu----CCGGGGuauuGAUUUCUgG- -5'
28982 5' -53 NC_006146.1 + 162472 0.66 0.982899
Target:  5'- cCCGaGCUcuccuGGuCCCCAggguccgGACUauGAAGACCc -3'
miRNA:   3'- -GGC-CGGu----CC-GGGGUa------UUGA--UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 161957 0.68 0.95655
Target:  5'- cCCGGCUucccuuucgggcaacGCCCCGUG---GGAGACCg -3'
miRNA:   3'- -GGCCGGuc-------------CGGGGUAUugaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 161890 0.68 0.95655
Target:  5'- cCCGGCUucccuuuugggcaacGCCCCGUG---GGAGACCg -3'
miRNA:   3'- -GGCCGGuc-------------CGGGGUAUugaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 161838 0.75 0.643807
Target:  5'- -gGGCCAcGCCCCGUG---GGAGACCg -3'
miRNA:   3'- ggCCGGUcCGGGGUAUugaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 161790 0.66 0.978659
Target:  5'- aCCGGCUccacgguggauAGGCUCCcug---GGAGACCc -3'
miRNA:   3'- -GGCCGG-----------UCCGGGGuauugaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 160872 0.68 0.949733
Target:  5'- aCCGGCCcuGGUCaugugCCGgcucCUGAAGGCCu -3'
miRNA:   3'- -GGCCGGu-CCGG-----GGUauu-GAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 160668 0.66 0.982899
Target:  5'- -aGGCCuucaGGGCCggcaCAUGACc-AGGGCCg -3'
miRNA:   3'- ggCCGG----UCCGGg---GUAUUGauUUCUGG- -5'
28982 5' -53 NC_006146.1 + 160541 0.69 0.936044
Target:  5'- --cGCCAGuuCCCCGUGACau-GGACCg -3'
miRNA:   3'- ggcCGGUCc-GGGGUAUUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 160179 0.69 0.920189
Target:  5'- -aGGCCAGaCCCCA--ACUGcGGGCUc -3'
miRNA:   3'- ggCCGGUCcGGGGUauUGAUuUCUGG- -5'
28982 5' -53 NC_006146.1 + 160081 0.77 0.521825
Target:  5'- cCCGGCCucgAGGCCCUcu-GCgagGAGACCa -3'
miRNA:   3'- -GGCCGG---UCCGGGGuauUGau-UUCUGG- -5'
28982 5' -53 NC_006146.1 + 159557 0.68 0.953425
Target:  5'- cCUGcGCCAGGCCCguguacagcgucuCGUGcaugcagcuGCUGAGGuCCg -3'
miRNA:   3'- -GGC-CGGUCCGGG-------------GUAU---------UGAUUUCuGG- -5'
28982 5' -53 NC_006146.1 + 159556 0.69 0.914421
Target:  5'- gCGGUCAGcuacGCCCCcgccauGCUGGAGGCg -3'
miRNA:   3'- gGCCGGUC----CGGGGuau---UGAUUUCUGg -5'
28982 5' -53 NC_006146.1 + 159512 0.67 0.967923
Target:  5'- gCCGGCCA-GCCUCAacuacGACUccuGGCCc -3'
miRNA:   3'- -GGCCGGUcCGGGGUa----UUGAuuuCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.