miRNA display CGI


Results 61 - 80 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28982 5' -53 NC_006146.1 + 159047 0.76 0.602651
Target:  5'- gCGGCCAccaGCCCCAUGugcucGCUuugcGAGGGCCg -3'
miRNA:   3'- gGCCGGUc--CGGGGUAU-----UGA----UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 159008 0.71 0.851257
Target:  5'- aCCGcguaguuGCCGGGCCCCGUuggugccagucAACgucGGGCCc -3'
miRNA:   3'- -GGC-------CGGUCCGGGGUA-----------UUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 158827 0.66 0.977247
Target:  5'- aCGGCCGGGgCCCGgcccucgcaaagcgAGCacauGGGGCUg -3'
miRNA:   3'- gGCCGGUCCgGGGUa-------------UUGau--UUCUGG- -5'
28982 5' -53 NC_006146.1 + 158454 0.74 0.694972
Target:  5'- -gGGCCAGaGUCCCcccgaGUGGCUcAAGGGCCa -3'
miRNA:   3'- ggCCGGUC-CGGGG-----UAUUGA-UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 158213 0.7 0.902165
Target:  5'- aUGGCCAGGCUCC-UGAaguuGGugCa -3'
miRNA:   3'- gGCCGGUCCGGGGuAUUgauuUCugG- -5'
28982 5' -53 NC_006146.1 + 157759 0.67 0.961317
Target:  5'- gUCGGCCGcGGCCUac--GC-GGAGGCCa -3'
miRNA:   3'- -GGCCGGU-CCGGGguauUGaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 157488 0.69 0.931
Target:  5'- aCCGGgCGGGCCUUGcagaccUGGCUGAGGcaguCCg -3'
miRNA:   3'- -GGCCgGUCCGGGGU------AUUGAUUUCu---GG- -5'
28982 5' -53 NC_006146.1 + 157200 0.67 0.964728
Target:  5'- aCGGCCgAGGCCgCgCGUGACUuuuuGGAa- -3'
miRNA:   3'- gGCCGG-UCCGG-G-GUAUUGAuu--UCUgg -5'
28982 5' -53 NC_006146.1 + 156914 0.68 0.949733
Target:  5'- cCCGGCCgAGGCCUgGguggcggcGCUGAcGGGCUc -3'
miRNA:   3'- -GGCCGG-UCCGGGgUau------UGAUU-UCUGG- -5'
28982 5' -53 NC_006146.1 + 156762 0.7 0.895683
Target:  5'- aCGGCCAGcGCguacaCC-UGGCUGuAGGCCg -3'
miRNA:   3'- gGCCGGUC-CGg----GGuAUUGAUuUCUGG- -5'
28982 5' -53 NC_006146.1 + 156557 0.79 0.464052
Target:  5'- cCUGGaCCGGGCCCUggAGCUGcuGGGCCg -3'
miRNA:   3'- -GGCC-GGUCCGGGGuaUUGAUu-UCUGG- -5'
28982 5' -53 NC_006146.1 + 156377 0.7 0.888967
Target:  5'- cCCGGuCCAGgcucuccaGCCCCAU-GCUGuGAGACa -3'
miRNA:   3'- -GGCC-GGUC--------CGGGGUAuUGAU-UUCUGg -5'
28982 5' -53 NC_006146.1 + 156284 0.73 0.758357
Target:  5'- gCCGGCCGGGCCggaggagggcacgguCUcgGGCccGGGGCCg -3'
miRNA:   3'- -GGCCGGUCCGG---------------GGuaUUGauUUCUGG- -5'
28982 5' -53 NC_006146.1 + 156060 0.75 0.674603
Target:  5'- cUCGGCCucccgcGGCCCCG-GGCccGAGACCg -3'
miRNA:   3'- -GGCCGGu-----CCGGGGUaUUGauUUCUGG- -5'
28982 5' -53 NC_006146.1 + 156057 0.69 0.936044
Target:  5'- cCUGGCCAGGgCCCGccgGGCcugcgaGGAGGCa -3'
miRNA:   3'- -GGCCGGUCCgGGGUa--UUGa-----UUUCUGg -5'
28982 5' -53 NC_006146.1 + 155877 0.69 0.934556
Target:  5'- cCUGGCCAGGCgCCCcucccuggcaaacagGGCagAGAGACg -3'
miRNA:   3'- -GGCCGGUCCG-GGGua-------------UUGa-UUUCUGg -5'
28982 5' -53 NC_006146.1 + 155487 0.68 0.953824
Target:  5'- gCCgGGCCA-GCCCCu---CU-GAGGCCa -3'
miRNA:   3'- -GG-CCGGUcCGGGGuauuGAuUUCUGG- -5'
28982 5' -53 NC_006146.1 + 155203 0.8 0.375898
Target:  5'- cUCGGCCAguGGCCCCGUGAUgAAGGugUa -3'
miRNA:   3'- -GGCCGGU--CCGGGGUAUUGaUUUCugG- -5'
28982 5' -53 NC_006146.1 + 155178 0.74 0.684809
Target:  5'- uCUGuGCCGGGCCCU---GCgcGAGGCCg -3'
miRNA:   3'- -GGC-CGGUCCGGGGuauUGauUUCUGG- -5'
28982 5' -53 NC_006146.1 + 154982 0.71 0.866713
Target:  5'- aCGGCCucgcgcaGGGCCCgGcacagaaguugcUGGCUcGAGGCCa -3'
miRNA:   3'- gGCCGG-------UCCGGGgU------------AUUGAuUUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.