miRNA display CGI


Results 81 - 100 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28982 5' -53 NC_006146.1 + 154591 0.68 0.957684
Target:  5'- gCGGaagAGGUCgCCGUGGCUGGAGAgCu -3'
miRNA:   3'- gGCCgg-UCCGG-GGUAUUGAUUUCUgG- -5'
28982 5' -53 NC_006146.1 + 154400 0.66 0.985465
Target:  5'- gCCaGCCAGacgcagguccacgacGCCCCGggguggauACUGuGGACCu -3'
miRNA:   3'- -GGcCGGUC---------------CGGGGUau------UGAUuUCUGG- -5'
28982 5' -53 NC_006146.1 + 153496 0.67 0.973686
Target:  5'- cCUGGcCCGGGCCUgGUGcCUGGAG-Ca -3'
miRNA:   3'- -GGCC-GGUCCGGGgUAUuGAUUUCuGg -5'
28982 5' -53 NC_006146.1 + 152408 0.66 0.98647
Target:  5'- cCUGGCCcuGgCCCAUGGCaUGuuGACg -3'
miRNA:   3'- -GGCCGGucCgGGGUAUUG-AUuuCUGg -5'
28982 5' -53 NC_006146.1 + 151963 0.66 0.980867
Target:  5'- aCUGGgCAGGCgCaa-GGCUGAcgGGGCCa -3'
miRNA:   3'- -GGCCgGUCCGgGguaUUGAUU--UCUGG- -5'
28982 5' -53 NC_006146.1 + 151928 0.74 0.715128
Target:  5'- uCCGGCCcuGCCgCCcucuCUAGGGGCCg -3'
miRNA:   3'- -GGCCGGucCGG-GGuauuGAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 151580 0.66 0.983093
Target:  5'- gCCGGCCuGGUugccguagCCCAUGAUggagcggcgcguGACCc -3'
miRNA:   3'- -GGCCGGuCCG--------GGGUAUUGauuu--------CUGG- -5'
28982 5' -53 NC_006146.1 + 151297 0.68 0.940845
Target:  5'- -aGGCCAgGGCCgUGUAG--GAGGGCCa -3'
miRNA:   3'- ggCCGGU-CCGGgGUAUUgaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 151190 0.66 0.980867
Target:  5'- gCCGGCCuccucCCCCGUGGaccaGAGGACg -3'
miRNA:   3'- -GGCCGGucc--GGGGUAUUga--UUUCUGg -5'
28982 5' -53 NC_006146.1 + 151113 0.68 0.953824
Target:  5'- -aGGUCaggAGGCCCCAcGACgccgggAAGGGCUu -3'
miRNA:   3'- ggCCGG---UCCGGGGUaUUGa-----UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 150996 0.72 0.818858
Target:  5'- aUGuGCCGGGCCCUGUccagGACguAGGGCCa -3'
miRNA:   3'- gGC-CGGUCCGGGGUA----UUGauUUCUGG- -5'
28982 5' -53 NC_006146.1 + 150976 0.71 0.844036
Target:  5'- gUGGCCcGGCaCCU---GCUGGGGGCCa -3'
miRNA:   3'- gGCCGGuCCG-GGGuauUGAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 150793 0.66 0.98647
Target:  5'- -gGuGCCGGGCCaCCGUGuccaGCUuguagucagAGAGGCUg -3'
miRNA:   3'- ggC-CGGUCCGG-GGUAU----UGA---------UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 150514 0.68 0.953824
Target:  5'- gCCGGCCuGcGCCCgGgcgagGACUAcGAGuCCu -3'
miRNA:   3'- -GGCCGGuC-CGGGgUa----UUGAU-UUCuGG- -5'
28982 5' -53 NC_006146.1 + 150004 0.68 0.949733
Target:  5'- cCCGgaGCCuguuuguGGCCCCcaucuccCUGGAGGCCg -3'
miRNA:   3'- -GGC--CGGu------CCGGGGuauu---GAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 149978 0.66 0.982107
Target:  5'- -gGGCCAGGgCCUgcaggucggccgGACUcAGGGCCu -3'
miRNA:   3'- ggCCGGUCCgGGGua----------UUGAuUUCUGG- -5'
28982 5' -53 NC_006146.1 + 149463 0.68 0.958057
Target:  5'- cCCGGCCuacgcggagcggcacGGCauuCCCGUGGCcAuuGACCa -3'
miRNA:   3'- -GGCCGGu--------------CCG---GGGUAUUGaUuuCUGG- -5'
28982 5' -53 NC_006146.1 + 147722 0.67 0.970907
Target:  5'- gCGGCgGGGCCUggguaAUAGC---GGGCCg -3'
miRNA:   3'- gGCCGgUCCGGGg----UAUUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 147638 0.66 0.980867
Target:  5'- cUCGGCCuacgAGGCCCU--GGCcgu-GGCCa -3'
miRNA:   3'- -GGCCGG----UCCGGGGuaUUGauuuCUGG- -5'
28982 5' -53 NC_006146.1 + 147445 0.73 0.734998
Target:  5'- aCGGCCAgGGCCUCGUAGgccGAGACg -3'
miRNA:   3'- gGCCGGU-CCGGGGUAUUgauUUCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.