miRNA display CGI


Results 101 - 120 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28982 5' -53 NC_006146.1 + 147115 0.7 0.902165
Target:  5'- -gGGCUcagcGGGCCCCAgacGCgc-AGGCCg -3'
miRNA:   3'- ggCCGG----UCCGGGGUau-UGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 147063 0.79 0.454746
Target:  5'- -gGGCCAGGUCCCGgcgUAGggAAAGGCCa -3'
miRNA:   3'- ggCCGGUCCGGGGU---AUUgaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 147036 0.71 0.835828
Target:  5'- cCCGaGCCAGGCCCgGgcucuacGCUGGcgcGGCCu -3'
miRNA:   3'- -GGC-CGGUCCGGGgUau-----UGAUUu--CUGG- -5'
28982 5' -53 NC_006146.1 + 146832 0.67 0.964728
Target:  5'- gCCGcGCCAGcguagaGCCCgGgccUGGCUcgGGGCCg -3'
miRNA:   3'- -GGC-CGGUC------CGGGgU---AUUGAuuUCUGG- -5'
28982 5' -53 NC_006146.1 + 146828 0.72 0.792136
Target:  5'- aUGGacCCAGGCCUCGUGACccu-GGCCg -3'
miRNA:   3'- gGCC--GGUCCGGGGUAUUGauuuCUGG- -5'
28982 5' -53 NC_006146.1 + 146688 0.71 0.859861
Target:  5'- gCGGCCccGGCCCCA--AC---AGACCu -3'
miRNA:   3'- gGCCGGu-CCGGGGUauUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 145321 0.68 0.949733
Target:  5'- aCCGGCCAGaGCCU---GGCcc-AGGCCu -3'
miRNA:   3'- -GGCCGGUC-CGGGguaUUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 144826 0.68 0.945408
Target:  5'- cCCGGCUGuuuccGGCCCaCGUuGCggcGGGCCa -3'
miRNA:   3'- -GGCCGGU-----CCGGG-GUAuUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 144770 0.72 0.801201
Target:  5'- uCCGaCCGGGCCCCGgugcCUuuccauGGACCa -3'
miRNA:   3'- -GGCcGGUCCGGGGUauu-GAuu----UCUGG- -5'
28982 5' -53 NC_006146.1 + 143255 0.68 0.945408
Target:  5'- aCCaGGCU-GGCCCgGUGACgcu-GGCCc -3'
miRNA:   3'- -GG-CCGGuCCGGGgUAUUGauuuCUGG- -5'
28982 5' -53 NC_006146.1 + 140602 0.66 0.982899
Target:  5'- uCCuGCCaacGGGCCCCAacacagagcUGACauccUGGAGAUCu -3'
miRNA:   3'- -GGcCGG---UCCGGGGU---------AUUG----AUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 139276 0.68 0.953824
Target:  5'- uCCaGGCgAGG-CCCGUGGCcAAAGuCCa -3'
miRNA:   3'- -GG-CCGgUCCgGGGUAUUGaUUUCuGG- -5'
28982 5' -53 NC_006146.1 + 138878 0.67 0.970907
Target:  5'- -gGGCCAGcGCCUCGUccc--GAGGCCc -3'
miRNA:   3'- ggCCGGUC-CGGGGUAuugauUUCUGG- -5'
28982 5' -53 NC_006146.1 + 138092 0.66 0.978659
Target:  5'- gCCGGCUGGGgguugugcacCCCCcgAGCgucuGGACg -3'
miRNA:   3'- -GGCCGGUCC----------GGGGuaUUGauu-UCUGg -5'
28982 5' -53 NC_006146.1 + 137971 0.72 0.810111
Target:  5'- gCGGaCCAGGCCCacccgGACc--GGACCa -3'
miRNA:   3'- gGCC-GGUCCGGGgua--UUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 137971 0.71 0.844036
Target:  5'- gCGGCCGGGCCUCcc----GGGGGCCc -3'
miRNA:   3'- gGCCGGUCCGGGGuauugaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 137913 0.71 0.867464
Target:  5'- aCCGGgUAGGCCCgGgcACccccggggGGAGGCCg -3'
miRNA:   3'- -GGCCgGUCCGGGgUauUGa-------UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 137889 0.73 0.734998
Target:  5'- gCCGGCaggGGGuCCCCGUGGac-AGGGCCg -3'
miRNA:   3'- -GGCCGg--UCC-GGGGUAUUgauUUCUGG- -5'
28982 5' -53 NC_006146.1 + 137784 0.73 0.7641
Target:  5'- cCCGGCCcccGGCCCg--AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGguaUUGAu-UUCUGG- -5'
28982 5' -53 NC_006146.1 + 137692 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.