Results 121 - 140 of 590 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28982 | 5' | -53 | NC_006146.1 | + | 137599 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 137506 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 137484 | 0.68 | 0.957684 |
Target: 5'- uCCGcuGCCcGGUCCUggAGCUcgGGGCCg -3' miRNA: 3'- -GGC--CGGuCCGGGGuaUUGAuuUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 137413 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 137391 | 0.68 | 0.957684 |
Target: 5'- uCCGcuGCCcGGUCCUggAGCUcgGGGCCg -3' miRNA: 3'- -GGC--CGGuCCGGGGuaUUGAuuUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 137320 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 137298 | 0.68 | 0.957684 |
Target: 5'- uCCGcuGCCcGGUCCUggAGCUcgGGGCCg -3' miRNA: 3'- -GGC--CGGuCCGGGGuaUUGAuuUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 137227 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 137205 | 0.68 | 0.957684 |
Target: 5'- uCCGcuGCCcGGUCCUggAGCUcgGGGCCg -3' miRNA: 3'- -GGC--CGGuCCGGGGuaUUGAuuUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 137135 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 137112 | 0.68 | 0.957684 |
Target: 5'- uCCGcuGCCcGGUCCUggAGCUcgGGGCCg -3' miRNA: 3'- -GGC--CGGuCCGGGGuaUUGAuuUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 137042 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 137019 | 0.68 | 0.957684 |
Target: 5'- uCCGcuGCCcGGUCCUggAGCUcgGGGCCg -3' miRNA: 3'- -GGC--CGGuCCGGGGuaUUGAuuUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 136949 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 136926 | 0.68 | 0.957684 |
Target: 5'- uCCGcuGCCcGGUCCUggAGCUcgGGGCCg -3' miRNA: 3'- -GGC--CGGuCCGGGGuaUUGAuuUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 136856 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 136833 | 0.68 | 0.957684 |
Target: 5'- uCCGcuGCCcGGUCCUggAGCUcgGGGCCg -3' miRNA: 3'- -GGC--CGGuCCGGGGuaUUGAuuUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 136763 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 136740 | 0.68 | 0.957684 |
Target: 5'- uCCGcuGCCcGGUCCUggAGCUcgGGGCCg -3' miRNA: 3'- -GGC--CGGuCCGGGGuaUUGAuuUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 136670 | 0.81 | 0.367724 |
Target: 5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3' miRNA: 3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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