miRNA display CGI


Results 161 - 180 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28982 5' -53 NC_006146.1 + 135699 0.66 0.977247
Target:  5'- gUGGCCGGGCCgcugCCGgguccGCUGcccguccuggagcucGGGGCCg -3'
miRNA:   3'- gGCCGGUCCGG----GGUau---UGAU---------------UUCUGG- -5'
28982 5' -53 NC_006146.1 + 135648 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28982 5' -53 NC_006146.1 + 135626 0.68 0.957684
Target:  5'- uCCGcuGCCcGGUCCUggAGCUcgGGGCCg -3'
miRNA:   3'- -GGC--CGGuCCGGGGuaUUGAuuUCUGG- -5'
28982 5' -53 NC_006146.1 + 135555 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28982 5' -53 NC_006146.1 + 135533 0.68 0.957684
Target:  5'- uCCGcuGCCcGGUCCUggAGCUcgGGGCCg -3'
miRNA:   3'- -GGC--CGGuCCGGGGuaUUGAuuUCUGG- -5'
28982 5' -53 NC_006146.1 + 135462 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28982 5' -53 NC_006146.1 + 135440 0.68 0.957684
Target:  5'- uCCGcuGCCcGGUCCUggAGCUcgGGGCCg -3'
miRNA:   3'- -GGC--CGGuCCGGGGuaUUGAuuUCUGG- -5'
28982 5' -53 NC_006146.1 + 135369 0.81 0.367724
Target:  5'- cCCGGCCcccGGCCCCG-AGCUccAGGACCg -3'
miRNA:   3'- -GGCCGGu--CCGGGGUaUUGAu-UUCUGG- -5'
28982 5' -53 NC_006146.1 + 135347 0.68 0.957684
Target:  5'- uCCGcuGCCcGGUCCUggAGCUcgGGGCCg -3'
miRNA:   3'- -GGC--CGGuCCGGGGuaUUGAuuUCUGG- -5'
28982 5' -53 NC_006146.1 + 135254 0.68 0.957684
Target:  5'- uCCGcuGCCcGGUCCUggAGCUcgGGGCCg -3'
miRNA:   3'- -GGC--CGGuCCGGGGuaUUGAuuUCUGG- -5'
28982 5' -53 NC_006146.1 + 135161 0.68 0.957684
Target:  5'- uCCGcuGCCcGGUCCUggAGCUcgGGGCCg -3'
miRNA:   3'- -GGC--CGGuCCGGGGuaUUGAuuUCUGG- -5'
28982 5' -53 NC_006146.1 + 133610 0.67 0.973686
Target:  5'- aCCGGCacUAGGUUCCAccGAagguuaUAGAGACCc -3'
miRNA:   3'- -GGCCG--GUCCGGGGUa-UUg-----AUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 132943 0.74 0.699023
Target:  5'- gCGGCauccGGCCCCGgagaaccggggcuACUGGGGACCa -3'
miRNA:   3'- gGCCGgu--CCGGGGUau-----------UGAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 130880 0.68 0.95655
Target:  5'- aCGGCCcccagcAGGCCCCcugcUAcgcccacaccggccACUAcGGGCCg -3'
miRNA:   3'- gGCCGG------UCCGGGGu---AU--------------UGAUuUCUGG- -5'
28982 5' -53 NC_006146.1 + 130661 0.68 0.957684
Target:  5'- gCGGCagcGGCCCCGUAGgc-GGGugCg -3'
miRNA:   3'- gGCCGgu-CCGGGGUAUUgauUUCugG- -5'
28982 5' -53 NC_006146.1 + 130171 0.66 0.978659
Target:  5'- cCCGGCCGaGUCgUAU--UUAAAGGCCa -3'
miRNA:   3'- -GGCCGGUcCGGgGUAuuGAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 130108 0.77 0.561845
Target:  5'- gCCGcGCCGGcGCCCCAgGGCgcagAGAGACa -3'
miRNA:   3'- -GGC-CGGUC-CGGGGUaUUGa---UUUCUGg -5'
28982 5' -53 NC_006146.1 + 130041 0.7 0.887596
Target:  5'- gCGGCCcuggGGGCCUCGggguggagGGAGGCCa -3'
miRNA:   3'- gGCCGG----UCCGGGGUauuga---UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 129530 0.68 0.953824
Target:  5'- gCGGCCGGauGCCCCAc--CaGAGGACa -3'
miRNA:   3'- gGCCGGUC--CGGGGUauuGaUUUCUGg -5'
28982 5' -53 NC_006146.1 + 129109 0.68 0.93943
Target:  5'- aCCGGCagagggccugagagCGGGCgCCcgGGCgcAGGGCCu -3'
miRNA:   3'- -GGCCG--------------GUCCGgGGuaUUGauUUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.