miRNA display CGI


Results 101 - 120 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28982 5' -53 NC_006146.1 + 147115 0.7 0.902165
Target:  5'- -gGGCUcagcGGGCCCCAgacGCgc-AGGCCg -3'
miRNA:   3'- ggCCGG----UCCGGGGUau-UGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 13731 0.69 0.920189
Target:  5'- gCCGGCCggaGGGaCCCCGgcaGCccgGGAGAgCCg -3'
miRNA:   3'- -GGCCGG---UCC-GGGGUau-UGa--UUUCU-GG- -5'
28982 5' -53 NC_006146.1 + 22964 0.69 0.920189
Target:  5'- gCCGGCCggaGGGaCCCCGgcaGCccgGGAGAgCCg -3'
miRNA:   3'- -GGCCGG---UCC-GGGGUau-UGa--UUUCU-GG- -5'
28982 5' -53 NC_006146.1 + 168304 0.69 0.920189
Target:  5'- gCCGGCCgggggcugaggGGGCuCCCGagGGCg--GGGCCg -3'
miRNA:   3'- -GGCCGG-----------UCCG-GGGUa-UUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 78545 0.69 0.926255
Target:  5'- aCGGCCAaugccaaugcgagccGCCCCAUAucaGCUGccccAGGCCg -3'
miRNA:   3'- gGCCGGUc--------------CGGGGUAU---UGAUu---UCUGG- -5'
28982 5' -53 NC_006146.1 + 137971 0.71 0.844036
Target:  5'- gCGGCCGGGCCUCcc----GGGGGCCc -3'
miRNA:   3'- gGCCGGUCCGGGGuauugaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 69590 0.72 0.827433
Target:  5'- aUGGCCAGGUCCUggGGCagcGAGACg -3'
miRNA:   3'- gGCCGGUCCGGGGuaUUGau-UUCUGg -5'
28982 5' -53 NC_006146.1 + 28036 1.13 0.00351
Target:  5'- cCCGGCCAGGCCCCAUAACUAAAGACCc -3'
miRNA:   3'- -GGCCGGUCCGGGGUAUUGAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 155203 0.8 0.375898
Target:  5'- cUCGGCCAguGGCCCCGUGAUgAAGGugUa -3'
miRNA:   3'- -GGCCGGU--CCGGGGUAUUGaUUUCugG- -5'
28982 5' -53 NC_006146.1 + 168527 0.77 0.541712
Target:  5'- -aGGCCGGGCCUCcc--CUGGGGGCCu -3'
miRNA:   3'- ggCCGGUCCGGGGuauuGAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 4367 0.77 0.561845
Target:  5'- gUGGCCAcGGCCCCGcgGGCUccccAGGCCg -3'
miRNA:   3'- gGCCGGU-CCGGGGUa-UUGAuu--UCUGG- -5'
28982 5' -53 NC_006146.1 + 101960 0.76 0.602651
Target:  5'- cCUGGCUagGGGCUCCGggcucUGGCUAGAGGCUc -3'
miRNA:   3'- -GGCCGG--UCCGGGGU-----AUUGAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 161838 0.75 0.643807
Target:  5'- -gGGCCAcGCCCCGUG---GGAGACCg -3'
miRNA:   3'- ggCCGGUcCGGGGUAUugaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 21838 0.75 0.664361
Target:  5'- cCCGGCCcucgAGGCCUCAcAGCcc-AGGCCa -3'
miRNA:   3'- -GGCCGG----UCCGGGGUaUUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 5178 0.75 0.674603
Target:  5'- cCUGGCCAGGCCCgA-GACguuuucccuGGGCCu -3'
miRNA:   3'- -GGCCGGUCCGGGgUaUUGauu------UCUGG- -5'
28982 5' -53 NC_006146.1 + 151928 0.74 0.715128
Target:  5'- uCCGGCCcuGCCgCCcucuCUAGGGGCCg -3'
miRNA:   3'- -GGCCGGucCGG-GGuauuGAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 137889 0.73 0.734998
Target:  5'- gCCGGCaggGGGuCCCCGUGGac-AGGGCCg -3'
miRNA:   3'- -GGCCGg--UCC-GGGGUAUUgauUUCUGG- -5'
28982 5' -53 NC_006146.1 + 128851 0.73 0.7641
Target:  5'- cCCGGCCAGGCa-CAgg---AAGGGCCa -3'
miRNA:   3'- -GGCCGGUCCGggGUauugaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 43319 0.73 0.782924
Target:  5'- cCCGGCCGgcgcGGCCUCGgccGCccAGGGCCa -3'
miRNA:   3'- -GGCCGGU----CCGGGGUau-UGauUUCUGG- -5'
28982 5' -53 NC_006146.1 + 52100 0.72 0.827433
Target:  5'- gCCGGCgAGGCcaucuguucCCCGUcGCUGGAcACCa -3'
miRNA:   3'- -GGCCGgUCCG---------GGGUAuUGAUUUcUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.