miRNA display CGI


Results 121 - 140 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28982 5' -53 NC_006146.1 + 69494 0.76 0.602651
Target:  5'- aUGGCCAGGCCCgAccuGCcAAAGAUCg -3'
miRNA:   3'- gGCCGGUCCGGGgUau-UGaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 12603 0.75 0.664361
Target:  5'- cCCGGCCcucgAGGCCUCAcAGCcc-AGGCCa -3'
miRNA:   3'- -GGCCGG----UCCGGGGUaUUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 29120 0.69 0.920189
Target:  5'- gCCGGCCggaGGGaCCCCGgcaGCccgGGAGAgCCg -3'
miRNA:   3'- -GGCCGG---UCC-GGGGUau-UGa--UUUCU-GG- -5'
28982 5' -53 NC_006146.1 + 16809 0.69 0.920189
Target:  5'- gCCGGCCggaGGGaCCCCGgcaGCccgGGAGAgCCg -3'
miRNA:   3'- -GGCCGG---UCC-GGGGUau-UGa--UUUCU-GG- -5'
28982 5' -53 NC_006146.1 + 53797 0.69 0.914421
Target:  5'- cUCGGCCcgcgcGGCgUCCAUAGCgGGGGGCUg -3'
miRNA:   3'- -GGCCGGu----CCG-GGGUAUUGaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 40678 0.74 0.725103
Target:  5'- aCGGCCuGGCCaCCAcc-CUGAGGugCu -3'
miRNA:   3'- gGCCGGuCCGG-GGUauuGAUUUCugG- -5'
28982 5' -53 NC_006146.1 + 39255 0.73 0.748696
Target:  5'- cUCGGCCcugaggaacggguguGGGCCCCG-GACUcGAGACg -3'
miRNA:   3'- -GGCCGG---------------UCCGGGGUaUUGAuUUCUGg -5'
28982 5' -53 NC_006146.1 + 46714 0.73 0.773576
Target:  5'- gUCGGCCGcggcGGCUCCGaGGCgggcGGAGGCCa -3'
miRNA:   3'- -GGCCGGU----CCGGGGUaUUGa---UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 150996 0.72 0.818858
Target:  5'- aUGuGCCGGGCCCUGUccagGACguAGGGCCa -3'
miRNA:   3'- gGC-CGGUCCGGGGUA----UUGauUUCUGG- -5'
28982 5' -53 NC_006146.1 + 65715 0.72 0.827433
Target:  5'- cCCGGCUccccGGCCCCGgucACUGGacGGugCg -3'
miRNA:   3'- -GGCCGGu---CCGGGGUau-UGAUU--UCugG- -5'
28982 5' -53 NC_006146.1 + 95194 0.71 0.843224
Target:  5'- uUGGCCAGGUCCCugcGCUGcagcuccuccaggGAGGCg -3'
miRNA:   3'- gGCCGGUCCGGGGuauUGAU-------------UUCUGg -5'
28982 5' -53 NC_006146.1 + 76782 0.71 0.852049
Target:  5'- aCgGGCCAGaacGCCCCcacacGGCUAucagGAGGCCg -3'
miRNA:   3'- -GgCCGGUC---CGGGGua---UUGAU----UUCUGG- -5'
28982 5' -53 NC_006146.1 + 109176 0.71 0.852049
Target:  5'- cCCGGCCcuuagucugAGGCCCa--GACaGAGGGCUg -3'
miRNA:   3'- -GGCCGG---------UCCGGGguaUUGaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 91949 0.71 0.859861
Target:  5'- -aGGCCAGGaCCCCuaccACgGAGGACa -3'
miRNA:   3'- ggCCGGUCC-GGGGuau-UGaUUUCUGg -5'
28982 5' -53 NC_006146.1 + 89108 0.71 0.867464
Target:  5'- aCCGGCacuGCCCCAggUGGCacccccGGAGACCg -3'
miRNA:   3'- -GGCCGgucCGGGGU--AUUGa-----UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 55556 0.7 0.874853
Target:  5'- gCCGGCCaggaAGGCCUCgAUGACc-GAGuCCg -3'
miRNA:   3'- -GGCCGG----UCCGGGG-UAUUGauUUCuGG- -5'
28982 5' -53 NC_006146.1 + 116878 0.7 0.888967
Target:  5'- cCCGGCCAGGCgCagcaGUGcCUGcuccAGGGCUa -3'
miRNA:   3'- -GGCCGGUCCGgGg---UAUuGAU----UUCUGG- -5'
28982 5' -53 NC_006146.1 + 167531 0.7 0.894358
Target:  5'- gCCGcGCCcccGGCCCCucuccugGGAGGCCa -3'
miRNA:   3'- -GGC-CGGu--CCGGGGuauuga-UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 44710 0.7 0.895683
Target:  5'- gUGGCCGuGGCCCCc--GCUGGccGGCCu -3'
miRNA:   3'- gGCCGGU-CCGGGGuauUGAUUu-CUGG- -5'
28982 5' -53 NC_006146.1 + 53185 0.7 0.902165
Target:  5'- cUCGGCCucGGCCCCGgccuugGGGGGCg -3'
miRNA:   3'- -GGCCGGu-CCGGGGUauuga-UUUCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.