miRNA display CGI


Results 141 - 160 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28982 5' -53 NC_006146.1 + 159557 0.68 0.953425
Target:  5'- cCUGcGCCAGGCCCguguacagcgucuCGUGcaugcagcuGCUGAGGuCCg -3'
miRNA:   3'- -GGC-CGGUCCGGG-------------GUAU---------UGAUUUCuGG- -5'
28982 5' -53 NC_006146.1 + 113902 0.68 0.949733
Target:  5'- cUCGGCCAuGGCCCCcuucuaucuUAACcagcagguGGCCg -3'
miRNA:   3'- -GGCCGGU-CCGGGGu--------AUUGauuu----CUGG- -5'
28982 5' -53 NC_006146.1 + 167372 0.69 0.920189
Target:  5'- gCCGGCCgggggcugaggGGGCuCCCGagGGCg--GGGCCg -3'
miRNA:   3'- -GGCCGG-----------UCCG-GGGUa-UUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 22964 0.69 0.920189
Target:  5'- gCCGGCCggaGGGaCCCCGgcaGCccgGGAGAgCCg -3'
miRNA:   3'- -GGCCGG---UCC-GGGGUau-UGa--UUUCU-GG- -5'
28982 5' -53 NC_006146.1 + 158213 0.7 0.902165
Target:  5'- aUGGCCAGGCUCC-UGAaguuGGugCa -3'
miRNA:   3'- gGCCGGUCCGGGGuAUUgauuUCugG- -5'
28982 5' -53 NC_006146.1 + 53185 0.7 0.902165
Target:  5'- cUCGGCCucGGCCCCGgccuugGGGGGCg -3'
miRNA:   3'- -GGCCGGu-CCGGGGUauuga-UUUCUGg -5'
28982 5' -53 NC_006146.1 + 170326 0.7 0.894358
Target:  5'- gCCGcGCCcccGGCCCCucuccugGGAGGCCa -3'
miRNA:   3'- -GGC-CGGu--CCGGGGuauuga-UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 167531 0.7 0.894358
Target:  5'- gCCGcGCCcccGGCCCCucuccugGGAGGCCa -3'
miRNA:   3'- -GGC-CGGu--CCGGGGuauuga-UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 40731 0.7 0.888967
Target:  5'- uCCGGgCAGGCgggCCCGU-GCUuGGGGCUg -3'
miRNA:   3'- -GGCCgGUCCG---GGGUAuUGAuUUCUGG- -5'
28982 5' -53 NC_006146.1 + 48341 0.7 0.882022
Target:  5'- -gGGCCAGGCgUCCAgu-CUGGccagcGGGCCg -3'
miRNA:   3'- ggCCGGUCCG-GGGUauuGAUU-----UCUGG- -5'
28982 5' -53 NC_006146.1 + 78545 0.69 0.926255
Target:  5'- aCGGCCAaugccaaugcgagccGCCCCAUAucaGCUGccccAGGCCg -3'
miRNA:   3'- gGCCGGUc--------------CGGGGUAU---UGAUu---UCUGG- -5'
28982 5' -53 NC_006146.1 + 94973 0.69 0.931
Target:  5'- gCaGCCAGGCauuaaagaaCCAgUAGCaGAAGACCa -3'
miRNA:   3'- gGcCGGUCCGg--------GGU-AUUGaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 143255 0.68 0.945408
Target:  5'- aCCaGGCU-GGCCCgGUGACgcu-GGCCc -3'
miRNA:   3'- -GG-CCGGuCCGGGgUAUUGauuuCUGG- -5'
28982 5' -53 NC_006146.1 + 88281 0.68 0.945408
Target:  5'- -gGGUCGGGCCU-----CUGGGGACCa -3'
miRNA:   3'- ggCCGGUCCGGGguauuGAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 28848 0.68 0.940845
Target:  5'- cCCGGCagcccggguGGCCCCA------GAGGCCa -3'
miRNA:   3'- -GGCCGgu-------CCGGGGUauugauUUCUGG- -5'
28982 5' -53 NC_006146.1 + 19614 0.68 0.940845
Target:  5'- cCCGGCagcccggguGGCCCCA------GAGGCCa -3'
miRNA:   3'- -GGCCGgu-------CCGGGGUauugauUUCUGG- -5'
28982 5' -53 NC_006146.1 + 41515 0.69 0.936044
Target:  5'- -aGGCUuccGGCCCCAga---GGAGGCCg -3'
miRNA:   3'- ggCCGGu--CCGGGGUauugaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 157488 0.69 0.931
Target:  5'- aCCGGgCGGGCCUUGcagaccUGGCUGAGGcaguCCg -3'
miRNA:   3'- -GGCCgGUCCGGGGU------AUUGAUUUCu---GG- -5'
28982 5' -53 NC_006146.1 + 112985 0.69 0.931
Target:  5'- gCCGGCCAGcGCCCucugCAUGucCUGgacAAGGCg -3'
miRNA:   3'- -GGCCGGUC-CGGG----GUAUu-GAU---UUCUGg -5'
28982 5' -53 NC_006146.1 + 26366 0.69 0.931
Target:  5'- -aGGCCAGGCCCUccgucCUcccuGGCCa -3'
miRNA:   3'- ggCCGGUCCGGGGuauu-GAuuu-CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.