Results 41 - 60 of 590 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28982 | 5' | -53 | NC_006146.1 | + | 114148 | 0.66 | 0.98647 |
Target: 5'- cCUGGCCAcGGCagCAU-ACUcucaAGAGACCc -3' miRNA: 3'- -GGCCGGU-CCGggGUAuUGA----UUUCUGG- -5' |
|||||||
28982 | 5' | -53 | NC_006146.1 | + | 33922 | 0.66 | 0.98647 |
Target: 5'- aCCGGaCCGGaggaGCUCCAgAACggggguAGGCCg -3' miRNA: 3'- -GGCC-GGUC----CGGGGUaUUGauu---UCUGG- -5' |
|||||||
28982 | 5' | -53 | NC_006146.1 | + | 108569 | 0.66 | 0.98647 |
Target: 5'- cCCGG--GGGCUuuGUuAUUAAAGGCCa -3' miRNA: 3'- -GGCCggUCCGGggUAuUGAUUUCUGG- -5' |
|||||||
28982 | 5' | -53 | NC_006146.1 | + | 62125 | 0.66 | 0.98647 |
Target: 5'- aCCGGgCCcgugaAGGCCUCGg----AGGGACCc -3' miRNA: 3'- -GGCC-GG-----UCCGGGGUauugaUUUCUGG- -5' |
|||||||
28982 | 5' | -53 | NC_006146.1 | + | 46095 | 0.66 | 0.98647 |
Target: 5'- aCCGGCCGGGCgcugagaaauCUCAUGccCUAcGGAaCCc -3' miRNA: 3'- -GGCCGGUCCG----------GGGUAUu-GAUuUCU-GG- -5' |
|||||||
28982 | 5' | -53 | NC_006146.1 | + | 47588 | 0.66 | 0.986307 |
Target: 5'- cCUGGCCAcGGucgaCCCCAggcgggucgcgggUGGCaaGGAGACCg -3' miRNA: 3'- -GGCCGGU-CC----GGGGU-------------AUUGa-UUUCUGG- -5' |
|||||||
28982 | 5' | -53 | NC_006146.1 | + | 33731 | 0.66 | 0.986307 |
Target: 5'- -gGGCCAGGCaagccgggcacaaCCUAgggagGGAGGCCg -3' miRNA: 3'- ggCCGGUCCG-------------GGGUauugaUUUCUGG- -5' |
|||||||
28982 | 5' | -53 | NC_006146.1 | + | 13400 | 0.66 | 0.984764 |
Target: 5'- gCGGCUgaacccgaggAGGCgCCCGgAGC--GAGGCCg -3' miRNA: 3'- gGCCGG----------UCCG-GGGUaUUGauUUCUGG- -5' |
|||||||
28982 | 5' | -53 | NC_006146.1 | + | 109486 | 0.66 | 0.984764 |
Target: 5'- gCGGCCGGGgccgagaucccUCCCA--GCUAc-GACCu -3' miRNA: 3'- gGCCGGUCC-----------GGGGUauUGAUuuCUGG- -5' |
|||||||
28982 | 5' | -53 | NC_006146.1 | + | 41540 | 0.66 | 0.984764 |
Target: 5'- aCC-GCCAGGCCCU--------GGGCCa -3' miRNA: 3'- -GGcCGGUCCGGGGuauugauuUCUGG- -5' |
|||||||
28982 | 5' | -53 | NC_006146.1 | + | 111219 | 0.66 | 0.984764 |
Target: 5'- --cGCCAucaGCUCCGU-GCUAAAGGCCc -3' miRNA: 3'- ggcCGGUc--CGGGGUAuUGAUUUCUGG- -5' |
|||||||
28982 | 5' | -53 | NC_006146.1 | + | 29031 | 0.66 | 0.984764 |
Target: 5'- cCCGGgCUgccgGGGUCCCuccGGCUGgccuGGGACCc -3' miRNA: 3'- -GGCC-GG----UCCGGGGua-UUGAU----UUCUGG- -5' |
|||||||
28982 | 5' | -53 | NC_006146.1 | + | 28407 | 0.66 | 0.984764 |
Target: 5'- uCCGGCCgccggaGGGCucuaaCCCGUcuCUGuccacuagagGGGACCg -3' miRNA: 3'- -GGCCGG------UCCG-----GGGUAuuGAU----------UUCUGG- -5' |
|||||||
28982 | 5' | -53 | NC_006146.1 | + | 25953 | 0.66 | 0.984764 |
Target: 5'- cCCGGgCUgccgGGGUCCCuccGGCUGgccuGGGACCc -3' miRNA: 3'- -GGCC-GG----UCCGGGGua-UUGAU----UUCUGG- -5' |
|||||||
28982 | 5' | -53 | NC_006146.1 | + | 22875 | 0.66 | 0.984764 |
Target: 5'- cCCGGgCUgccgGGGUCCCuccGGCUGgccuGGGACCc -3' miRNA: 3'- -GGCC-GG----UCCGGGGua-UUGAU----UUCUGG- -5' |
|||||||
28982 | 5' | -53 | NC_006146.1 | + | 19797 | 0.66 | 0.984764 |
Target: 5'- cCCGGgCUgccgGGGUCCCuccGGCUGgccuGGGACCc -3' miRNA: 3'- -GGCC-GG----UCCGGGGua-UUGAU----UUCUGG- -5' |
|||||||
28982 | 5' | -53 | NC_006146.1 | + | 16719 | 0.66 | 0.984764 |
Target: 5'- cCCGGgCUgccgGGGUCCCuccGGCUGgccuGGGACCc -3' miRNA: 3'- -GGCC-GG----UCCGGGGua-UUGAU----UUCUGG- -5' |
|||||||
28982 | 5' | -53 | NC_006146.1 | + | 13641 | 0.66 | 0.984764 |
Target: 5'- cCCGGgCUgccgGGGUCCCuccGGCUGgccuGGGACCc -3' miRNA: 3'- -GGCC-GG----UCCGGGGua-UUGAU----UUCUGG- -5' |
|||||||
28982 | 5' | -53 | NC_006146.1 | + | 154400 | 0.66 | 0.985465 |
Target: 5'- gCCaGCCAGacgcagguccacgacGCCCCGggguggauACUGuGGACCu -3' miRNA: 3'- -GGcCGGUC---------------CGGGGUau------UGAUuUCUGG- -5' |
|||||||
28982 | 5' | -53 | NC_006146.1 | + | 58515 | 0.66 | 0.986307 |
Target: 5'- gCUGGCCAGGguggaguucuccaCCCCGgcgaAGCgcaugAAGGGCg -3' miRNA: 3'- -GGCCGGUCC-------------GGGGUa---UUGa----UUUCUGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home