Results 121 - 140 of 590 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28982 | 5' | -53 | NC_006146.1 | + | 46592 | 0.66 | 0.976268 |
Target: 5'- cUCGGCCuggucucGGCCCUGgcgaggGAC-GGGGGCCu -3' miRNA: 3'- -GGCCGGu------CCGGGGUa-----UUGaUUUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 69438 | 0.67 | 0.973686 |
Target: 5'- cCCGGaCCuGGCCCUGgggggaaacgGGCUAcGGGCg -3' miRNA: 3'- -GGCC-GGuCCGGGGUa---------UUGAUuUCUGg -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 55838 | 0.66 | 0.980005 |
Target: 5'- uCCGGCUgcugcaccccucggGGGCCCUcuucuacGACUAcguguacGAGGCCc -3' miRNA: 3'- -GGCCGG--------------UCCGGGGua-----UUGAU-------UUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 151963 | 0.66 | 0.980867 |
Target: 5'- aCUGGgCAGGCgCaa-GGCUGAcgGGGCCa -3' miRNA: 3'- -GGCCgGUCCGgGguaUUGAUU--UCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 147638 | 0.66 | 0.980867 |
Target: 5'- cUCGGCCuacgAGGCCCU--GGCcgu-GGCCa -3' miRNA: 3'- -GGCCGG----UCCGGGGuaUUGauuuCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 46967 | 0.66 | 0.982899 |
Target: 5'- gCCGGCCAGccauccGCCCgGggucgggaGGC-GAGGACCc -3' miRNA: 3'- -GGCCGGUC------CGGGgUa-------UUGaUUUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 99398 | 0.66 | 0.982899 |
Target: 5'- -aGGCCGcGGCCUCc---CUGGAGGCg -3' miRNA: 3'- ggCCGGU-CCGGGGuauuGAUUUCUGg -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 126747 | 0.66 | 0.982899 |
Target: 5'- uCCGuGaCCgcGGGCCCCGggGGC-AGAGACa -3' miRNA: 3'- -GGC-C-GG--UCCGGGGUa-UUGaUUUCUGg -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 140602 | 0.66 | 0.982899 |
Target: 5'- uCCuGCCaacGGGCCCCAacacagagcUGACauccUGGAGAUCu -3' miRNA: 3'- -GGcCGG---UCCGGGGU---------AUUG----AUUUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 167924 | 0.66 | 0.982899 |
Target: 5'- gCCGcGCCcccucAGGCCCCAcccGACgcgcgcucGGGCCc -3' miRNA: 3'- -GGC-CGG-----UCCGGGGUa--UUGauu-----UCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 168856 | 0.66 | 0.982899 |
Target: 5'- gCCGcGCCcccucAGGCCCCAcccGACgcgcgcucGGGCCc -3' miRNA: 3'- -GGC-CGG-----UCCGGGGUa--UUGauu-----UCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 169788 | 0.66 | 0.982899 |
Target: 5'- gCCGcGCCcccucAGGCCCCAcccGACgcgcgcucGGGCCc -3' miRNA: 3'- -GGC-CGG-----UCCGGGGUa--UUGauu-----UCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 133610 | 0.67 | 0.973686 |
Target: 5'- aCCGGCacUAGGUUCCAccGAagguuaUAGAGACCc -3' miRNA: 3'- -GGCCG--GUCCGGGGUa-UUg-----AUUUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 128298 | 0.66 | 0.982703 |
Target: 5'- cUCGGCCAGGUuggcgguCUCGcagAGCguguAGACCa -3' miRNA: 3'- -GGCCGGUCCG-------GGGUa--UUGauu-UCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 4007 | 0.66 | 0.980867 |
Target: 5'- cCCcGCCuGGCcugaCCCAgaccUGACUGuGGGCCa -3' miRNA: 3'- -GGcCGGuCCG----GGGU----AUUGAUuUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 48543 | 0.66 | 0.980867 |
Target: 5'- gCCGGCCcgcuGGCCa---GACUGGAcGCCu -3' miRNA: 3'- -GGCCGGu---CCGGgguaUUGAUUUcUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 163402 | 0.66 | 0.980867 |
Target: 5'- aCGGCCugcccGGCUCCu---CUGAGGGgCa -3' miRNA: 3'- gGCCGGu----CCGGGGuauuGAUUUCUgG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 96899 | 0.66 | 0.980867 |
Target: 5'- uCUGGUCcgugAGGCacuugaCCAccguGCUGGAGACCu -3' miRNA: 3'- -GGCCGG----UCCGg-----GGUau--UGAUUUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 119517 | 0.66 | 0.980867 |
Target: 5'- gCCGGgaGGGgCCCGggggAGCcagAGGGGCCa -3' miRNA: 3'- -GGCCggUCCgGGGUa---UUGa--UUUCUGG- -5' |
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28982 | 5' | -53 | NC_006146.1 | + | 128395 | 0.66 | 0.980867 |
Target: 5'- uCUGGCCcGGCgCCGcGGCgccccccuGGGCCg -3' miRNA: 3'- -GGCCGGuCCGgGGUaUUGauu-----UCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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