miRNA display CGI


Results 1 - 20 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28982 5' -53 NC_006146.1 + 55762 0.66 0.98647
Target:  5'- cCCGGCggCGGGCCagg-GGCagcGAGGCCa -3'
miRNA:   3'- -GGCCG--GUCCGGgguaUUGau-UUCUGG- -5'
28982 5' -53 NC_006146.1 + 27972 0.66 0.98647
Target:  5'- -aGGCaGGGCcuguagCCCGUGACUcugGAGGACg -3'
miRNA:   3'- ggCCGgUCCG------GGGUAUUGA---UUUCUGg -5'
28982 5' -53 NC_006146.1 + 128803 0.66 0.98647
Target:  5'- -aGGCCAGGUagCCCAgcGCcagAAAGuacaGCCg -3'
miRNA:   3'- ggCCGGUCCG--GGGUauUGa--UUUC----UGG- -5'
28982 5' -53 NC_006146.1 + 47588 0.66 0.986307
Target:  5'- cCUGGCCAcGGucgaCCCCAggcgggucgcgggUGGCaaGGAGACCg -3'
miRNA:   3'- -GGCCGGU-CC----GGGGU-------------AUUGa-UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 33731 0.66 0.986307
Target:  5'- -gGGCCAGGCaagccgggcacaaCCUAgggagGGAGGCCg -3'
miRNA:   3'- ggCCGGUCCG-------------GGGUauugaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 58515 0.66 0.986307
Target:  5'- gCUGGCCAGGguggaguucuccaCCCCGgcgaAGCgcaugAAGGGCg -3'
miRNA:   3'- -GGCCGGUCC-------------GGGGUa---UUGa----UUUCUGg -5'
28982 5' -53 NC_006146.1 + 154400 0.66 0.985465
Target:  5'- gCCaGCCAGacgcagguccacgacGCCCCGggguggauACUGuGGACCu -3'
miRNA:   3'- -GGcCGGUC---------------CGGGGUau------UGAUuUCUGG- -5'
28982 5' -53 NC_006146.1 + 13641 0.66 0.984764
Target:  5'- cCCGGgCUgccgGGGUCCCuccGGCUGgccuGGGACCc -3'
miRNA:   3'- -GGCC-GG----UCCGGGGua-UUGAU----UUCUGG- -5'
28982 5' -53 NC_006146.1 + 16719 0.66 0.984764
Target:  5'- cCCGGgCUgccgGGGUCCCuccGGCUGgccuGGGACCc -3'
miRNA:   3'- -GGCC-GG----UCCGGGGua-UUGAU----UUCUGG- -5'
28982 5' -53 NC_006146.1 + 24894 0.66 0.98647
Target:  5'- -aGGCaGGGCcuguagCCCGUGACUcugGAGGACg -3'
miRNA:   3'- ggCCGgUCCG------GGGUAUUGA---UUUCUGg -5'
28982 5' -53 NC_006146.1 + 21816 0.66 0.98647
Target:  5'- -aGGCaGGGCcuguagCCCGUGACUcugGAGGACg -3'
miRNA:   3'- ggCCGgUCCG------GGGUAUUGA---UUUCUGg -5'
28982 5' -53 NC_006146.1 + 18738 0.66 0.98647
Target:  5'- -aGGCaGGGCcuguagCCCGUGACUcugGAGGACg -3'
miRNA:   3'- ggCCGgUCCG------GGGUAUUGA---UUUCUGg -5'
28982 5' -53 NC_006146.1 + 46095 0.66 0.98647
Target:  5'- aCCGGCCGGGCgcugagaaauCUCAUGccCUAcGGAaCCc -3'
miRNA:   3'- -GGCCGGUCCG----------GGGUAUu-GAUuUCU-GG- -5'
28982 5' -53 NC_006146.1 + 62125 0.66 0.98647
Target:  5'- aCCGGgCCcgugaAGGCCUCGg----AGGGACCc -3'
miRNA:   3'- -GGCC-GG-----UCCGGGGUauugaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 108569 0.66 0.98647
Target:  5'- cCCGG--GGGCUuuGUuAUUAAAGGCCa -3'
miRNA:   3'- -GGCCggUCCGGggUAuUGAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 33922 0.66 0.98647
Target:  5'- aCCGGaCCGGaggaGCUCCAgAACggggguAGGCCg -3'
miRNA:   3'- -GGCC-GGUC----CGGGGUaUUGauu---UCUGG- -5'
28982 5' -53 NC_006146.1 + 114148 0.66 0.98647
Target:  5'- cCUGGCCAcGGCagCAU-ACUcucaAGAGACCc -3'
miRNA:   3'- -GGCCGGU-CCGggGUAuUGA----UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 118833 0.66 0.98647
Target:  5'- aCGGCCGGaGaCCCAgcaAGCagcGGACCu -3'
miRNA:   3'- gGCCGGUC-CgGGGUa--UUGauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 12581 0.66 0.98647
Target:  5'- -aGGCaGGGCcuguagCCCGUGACUcugGAGGACg -3'
miRNA:   3'- ggCCGgUCCG------GGGUAUUGA---UUUCUGg -5'
28982 5' -53 NC_006146.1 + 15660 0.66 0.98647
Target:  5'- -aGGCaGGGCcuguagCCCGUGACUcugGAGGACg -3'
miRNA:   3'- ggCCGgUCCG------GGGUAUUGA---UUUCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.