miRNA display CGI


Results 21 - 40 of 590 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28982 5' -53 NC_006146.1 + 33731 0.66 0.986307
Target:  5'- -gGGCCAGGCaagccgggcacaaCCUAgggagGGAGGCCg -3'
miRNA:   3'- ggCCGGUCCG-------------GGGUauugaUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 58515 0.66 0.986307
Target:  5'- gCUGGCCAGGguggaguucuccaCCCCGgcgaAGCgcaugAAGGGCg -3'
miRNA:   3'- -GGCCGGUCC-------------GGGGUa---UUGa----UUUCUGg -5'
28982 5' -53 NC_006146.1 + 47588 0.66 0.986307
Target:  5'- cCUGGCCAcGGucgaCCCCAggcgggucgcgggUGGCaaGGAGACCg -3'
miRNA:   3'- -GGCCGGU-CC----GGGGU-------------AUUGa-UUUCUGG- -5'
28982 5' -53 NC_006146.1 + 57975 0.66 0.986307
Target:  5'- -aGGaguucuuCCAGGCgCaCCAggacgAGCUGGAGGCCc -3'
miRNA:   3'- ggCC-------GGUCCG-G-GGUa----UUGAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 154400 0.66 0.985465
Target:  5'- gCCaGCCAGacgcagguccacgacGCCCCGggguggauACUGuGGACCu -3'
miRNA:   3'- -GGcCGGUC---------------CGGGGUau------UGAUuUCUGG- -5'
28982 5' -53 NC_006146.1 + 13381 0.66 0.984764
Target:  5'- -gGGCCcaGGGCCCCuaguccagagGACgGAGGAgCa -3'
miRNA:   3'- ggCCGG--UCCGGGGua--------UUGaUUUCUgG- -5'
28982 5' -53 NC_006146.1 + 19537 0.66 0.984764
Target:  5'- -gGGCCcaGGGCCCCuaguccagagGACgGAGGAgCa -3'
miRNA:   3'- ggCCGG--UCCGGGGua--------UUGaUUUCUgG- -5'
28982 5' -53 NC_006146.1 + 22615 0.66 0.984764
Target:  5'- -gGGCCcaGGGCCCCuaguccagagGACgGAGGAgCa -3'
miRNA:   3'- ggCCGG--UCCGGGGua--------UUGaUUUCUgG- -5'
28982 5' -53 NC_006146.1 + 19555 0.66 0.984764
Target:  5'- gCGGCUgaacccgaggAGGCgCCCGgAGC--GAGGCCg -3'
miRNA:   3'- gGCCGG----------UCCG-GGGUaUUGauUUCUGG- -5'
28982 5' -53 NC_006146.1 + 16459 0.66 0.984764
Target:  5'- -gGGCCcaGGGCCCCuaguccagagGACgGAGGAgCa -3'
miRNA:   3'- ggCCGG--UCCGGGGua--------UUGaUUUCUgG- -5'
28982 5' -53 NC_006146.1 + 16477 0.66 0.984764
Target:  5'- gCGGCUgaacccgaggAGGCgCCCGgAGC--GAGGCCg -3'
miRNA:   3'- gGCCGG----------UCCG-GGGUaUUGauUUCUGG- -5'
28982 5' -53 NC_006146.1 + 19797 0.66 0.984764
Target:  5'- cCCGGgCUgccgGGGUCCCuccGGCUGgccuGGGACCc -3'
miRNA:   3'- -GGCC-GG----UCCGGGGua-UUGAU----UUCUGG- -5'
28982 5' -53 NC_006146.1 + 22875 0.66 0.984764
Target:  5'- cCCGGgCUgccgGGGUCCCuccGGCUGgccuGGGACCc -3'
miRNA:   3'- -GGCC-GG----UCCGGGGua-UUGAU----UUCUGG- -5'
28982 5' -53 NC_006146.1 + 25953 0.66 0.984764
Target:  5'- cCCGGgCUgccgGGGUCCCuccGGCUGgccuGGGACCc -3'
miRNA:   3'- -GGCC-GG----UCCGGGGua-UUGAU----UUCUGG- -5'
28982 5' -53 NC_006146.1 + 28407 0.66 0.984764
Target:  5'- uCCGGCCgccggaGGGCucuaaCCCGUcuCUGuccacuagagGGGACCg -3'
miRNA:   3'- -GGCCGG------UCCG-----GGGUAuuGAU----------UUCUGG- -5'
28982 5' -53 NC_006146.1 + 29031 0.66 0.984764
Target:  5'- cCCGGgCUgccgGGGUCCCuccGGCUGgccuGGGACCc -3'
miRNA:   3'- -GGCC-GG----UCCGGGGua-UUGAU----UUCUGG- -5'
28982 5' -53 NC_006146.1 + 111219 0.66 0.984764
Target:  5'- --cGCCAucaGCUCCGU-GCUAAAGGCCc -3'
miRNA:   3'- ggcCGGUc--CGGGGUAuUGAUUUCUGG- -5'
28982 5' -53 NC_006146.1 + 41540 0.66 0.984764
Target:  5'- aCC-GCCAGGCCCU--------GGGCCa -3'
miRNA:   3'- -GGcCGGUCCGGGGuauugauuUCUGG- -5'
28982 5' -53 NC_006146.1 + 109486 0.66 0.984764
Target:  5'- gCGGCCGGGgccgagaucccUCCCA--GCUAc-GACCu -3'
miRNA:   3'- gGCCGGUCC-----------GGGGUauUGAUuuCUGG- -5'
28982 5' -53 NC_006146.1 + 13400 0.66 0.984764
Target:  5'- gCGGCUgaacccgaggAGGCgCCCGgAGC--GAGGCCg -3'
miRNA:   3'- gGCCGG----------UCCG-GGGUaUUGauUUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.