Results 1 - 20 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28983 | 3' | -63 | NC_006146.1 | + | 10 | 0.66 | 0.63877 |
Target: 5'- aGGGG-GGAGGGGGGgUUGaggggCCGGGa- -3' miRNA: 3'- cCCUCaCCUCCCCCU-AGCg----GGCCCag -5' |
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28983 | 3' | -63 | NC_006146.1 | + | 3766 | 0.7 | 0.41854 |
Target: 5'- -uGAGUGGAcGGGGGAuuucauuUCGCCCucuGGGa- -3' miRNA: 3'- ccCUCACCU-CCCCCU-------AGCGGG---CCCag -5' |
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28983 | 3' | -63 | NC_006146.1 | + | 9349 | 0.72 | 0.306702 |
Target: 5'- cGGGGGUGGcggcugagguccgAGGGGG--CGCCUGGG-Cg -3' miRNA: 3'- -CCCUCACC-------------UCCCCCuaGCGGGCCCaG- -5' |
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28983 | 3' | -63 | NC_006146.1 | + | 12999 | 1.1 | 0.000767 |
Target: 5'- gGGGAGUGGAGGGGGAUCGCCCGGGUCu -3' miRNA: 3'- -CCCUCACCUCCCCCUAGCGGGCCCAG- -5' |
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28983 | 3' | -63 | NC_006146.1 | + | 13844 | 0.7 | 0.444561 |
Target: 5'- gGGGAGgagGGAGGGGaGAggcUGCUgGGGa- -3' miRNA: 3'- -CCCUCa--CCUCCCC-CUa--GCGGgCCCag -5' |
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28983 | 3' | -63 | NC_006146.1 | + | 14116 | 0.71 | 0.371675 |
Target: 5'- aGGGAGagaGGAGGGGGAggcgggcgcccUUGCCUGGa-- -3' miRNA: 3'- -CCCUCa--CCUCCCCCU-----------AGCGGGCCcag -5' |
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28983 | 3' | -63 | NC_006146.1 | + | 16077 | 1.1 | 0.000767 |
Target: 5'- gGGGAGUGGAGGGGGAUCGCCCGGGUCu -3' miRNA: 3'- -CCCUCACCUCCCCCUAGCGGGCCCAG- -5' |
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28983 | 3' | -63 | NC_006146.1 | + | 16922 | 0.7 | 0.444561 |
Target: 5'- gGGGAGgagGGAGGGGaGAggcUGCUgGGGa- -3' miRNA: 3'- -CCCUCa--CCUCCCC-CUa--GCGGgCCCag -5' |
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28983 | 3' | -63 | NC_006146.1 | + | 17194 | 0.71 | 0.371675 |
Target: 5'- aGGGAGagaGGAGGGGGAggcgggcgcccUUGCCUGGa-- -3' miRNA: 3'- -CCCUCa--CCUCCCCCU-----------AGCGGGCCcag -5' |
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28983 | 3' | -63 | NC_006146.1 | + | 19155 | 1.1 | 0.000767 |
Target: 5'- gGGGAGUGGAGGGGGAUCGCCCGGGUCu -3' miRNA: 3'- -CCCUCACCUCCCCCUAGCGGGCCCAG- -5' |
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28983 | 3' | -63 | NC_006146.1 | + | 20000 | 0.7 | 0.444561 |
Target: 5'- gGGGAGgagGGAGGGGaGAggcUGCUgGGGa- -3' miRNA: 3'- -CCCUCa--CCUCCCC-CUa--GCGGgCCCag -5' |
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28983 | 3' | -63 | NC_006146.1 | + | 20272 | 0.71 | 0.371675 |
Target: 5'- aGGGAGagaGGAGGGGGAggcgggcgcccUUGCCUGGa-- -3' miRNA: 3'- -CCCUCa--CCUCCCCCU-----------AGCGGGCCcag -5' |
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28983 | 3' | -63 | NC_006146.1 | + | 20413 | 0.7 | 0.403057 |
Target: 5'- gGGGAGUGGccAGGGGGAcggagggccUgGCCUGcGGg- -3' miRNA: 3'- -CCCUCACC--UCCCCCU---------AgCGGGC-CCag -5' |
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28983 | 3' | -63 | NC_006146.1 | + | 22233 | 1.1 | 0.000767 |
Target: 5'- gGGGAGUGGAGGGGGAUCGCCCGGGUCu -3' miRNA: 3'- -CCCUCACCUCCCCCUAGCGGGCCCAG- -5' |
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28983 | 3' | -63 | NC_006146.1 | + | 23078 | 0.7 | 0.444561 |
Target: 5'- gGGGAGgagGGAGGGGaGAggcUGCUgGGGa- -3' miRNA: 3'- -CCCUCa--CCUCCCC-CUa--GCGGgCCCag -5' |
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28983 | 3' | -63 | NC_006146.1 | + | 23350 | 0.71 | 0.371675 |
Target: 5'- aGGGAGagaGGAGGGGGAggcgggcgcccUUGCCUGGa-- -3' miRNA: 3'- -CCCUCa--CCUCCCCCU-----------AGCGGGCCcag -5' |
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28983 | 3' | -63 | NC_006146.1 | + | 25311 | 1.1 | 0.000767 |
Target: 5'- gGGGAGUGGAGGGGGAUCGCCCGGGUCu -3' miRNA: 3'- -CCCUCACCUCCCCCUAGCGGGCCCAG- -5' |
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28983 | 3' | -63 | NC_006146.1 | + | 26156 | 0.7 | 0.444561 |
Target: 5'- gGGGAGgagGGAGGGGaGAggcUGCUgGGGa- -3' miRNA: 3'- -CCCUCa--CCUCCCC-CUa--GCGGgCCCag -5' |
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28983 | 3' | -63 | NC_006146.1 | + | 26427 | 0.71 | 0.371675 |
Target: 5'- aGGGAGagaGGAGGGGGAggcgggcgcccUUGCCUGGa-- -3' miRNA: 3'- -CCCUCa--CCUCCCCCU-----------AGCGGGCCcag -5' |
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28983 | 3' | -63 | NC_006146.1 | + | 28389 | 1.1 | 0.000767 |
Target: 5'- gGGGAGUGGAGGGGGAUCGCCCGGGUCu -3' miRNA: 3'- -CCCUCACCUCCCCCUAGCGGGCCCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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