Results 21 - 40 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28983 | 3' | -63 | NC_006146.1 | + | 29234 | 0.7 | 0.444561 |
Target: 5'- gGGGAGgagGGAGGGGaGAggcUGCUgGGGa- -3' miRNA: 3'- -CCCUCa--CCUCCCC-CUa--GCGGgCCCag -5' |
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28983 | 3' | -63 | NC_006146.1 | + | 29505 | 0.71 | 0.371675 |
Target: 5'- aGGGAGagaGGAGGGGGAggcgggcgcccUUGCCUGGa-- -3' miRNA: 3'- -CCCUCa--CCUCCCCCU-----------AGCGGGCCcag -5' |
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28983 | 3' | -63 | NC_006146.1 | + | 30970 | 0.7 | 0.411161 |
Target: 5'- aGGGGGUGGcggaggugguGGcGGGGGUgC-CCCGGGUa -3' miRNA: 3'- -CCCUCACC----------UC-CCCCUA-GcGGGCCCAg -5' |
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28983 | 3' | -63 | NC_006146.1 | + | 33398 | 0.7 | 0.403057 |
Target: 5'- -cGGGUGGGGGGuGGccCGCCUGGG-Ca -3' miRNA: 3'- ccCUCACCUCCC-CCuaGCGGGCCCaG- -5' |
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28983 | 3' | -63 | NC_006146.1 | + | 33474 | 0.7 | 0.426833 |
Target: 5'- uGGGGGUcgggaagGGAGGGGcguGGUC-CCCGGGa- -3' miRNA: 3'- -CCCUCA-------CCUCCCC---CUAGcGGGCCCag -5' |
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28983 | 3' | -63 | NC_006146.1 | + | 33644 | 0.75 | 0.200254 |
Target: 5'- cGGGGGUGGGGGaGGGAgggguguggUC-CCCGGGa- -3' miRNA: 3'- -CCCUCACCUCC-CCCU---------AGcGGGCCCag -5' |
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28983 | 3' | -63 | NC_006146.1 | + | 33706 | 0.73 | 0.269429 |
Target: 5'- aGGGAG-GGAGGccGGGAgggUGCUgGGGUCc -3' miRNA: 3'- -CCCUCaCCUCC--CCCUa--GCGGgCCCAG- -5' |
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28983 | 3' | -63 | NC_006146.1 | + | 33831 | 0.7 | 0.427668 |
Target: 5'- cGGGGGUGGGGGaGGGAgggguguggUC-CCCGGa-- -3' miRNA: 3'- -CCCUCACCUCC-CCCU---------AGcGGGCCcag -5' |
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28983 | 3' | -63 | NC_006146.1 | + | 41827 | 0.67 | 0.562221 |
Target: 5'- aGGGAuGUGGGGcuGGucugCGCCCGGGcCc -3' miRNA: 3'- -CCCU-CACCUCccCCua--GCGGGCCCaG- -5' |
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28983 | 3' | -63 | NC_006146.1 | + | 44000 | 0.73 | 0.30077 |
Target: 5'- aGGGAgGUGGugucAGGGGGGUcgaCGCCCGGa-- -3' miRNA: 3'- -CCCU-CACC----UCCCCCUA---GCGGGCCcag -5' |
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28983 | 3' | -63 | NC_006146.1 | + | 44637 | 0.67 | 0.587892 |
Target: 5'- uGGAGcUGGAGaGGcgucucccaagcccGGG-CGCCUGGGUCc -3' miRNA: 3'- cCCUC-ACCUC-CC--------------CCUaGCGGGCCCAG- -5' |
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28983 | 3' | -63 | NC_006146.1 | + | 47702 | 0.69 | 0.488354 |
Target: 5'- uGGGcGUGGAagagGuGGGGAgcagCGCCCGGagcucGUCg -3' miRNA: 3'- -CCCuCACCU----C-CCCCUa---GCGGGCC-----CAG- -5' |
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28983 | 3' | -63 | NC_006146.1 | + | 48011 | 0.72 | 0.335562 |
Target: 5'- cGGGAGgcuUGGcGGGGGAggcacggcgggccgGCUCGGGUCg -3' miRNA: 3'- -CCCUC---ACCuCCCCCUag------------CGGGCCCAG- -5' |
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28983 | 3' | -63 | NC_006146.1 | + | 48213 | 0.76 | 0.191097 |
Target: 5'- gGGGAcUGGAGGGccuGGcgCGCCUGGGUg -3' miRNA: 3'- -CCCUcACCUCCC---CCuaGCGGGCCCAg -5' |
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28983 | 3' | -63 | NC_006146.1 | + | 51831 | 0.74 | 0.233752 |
Target: 5'- cGGGGcggcGUGGAGGGGGGcUCggggccuggcccgaGCCCGGGg- -3' miRNA: 3'- -CCCU----CACCUCCCCCU-AG--------------CGGGCCCag -5' |
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28983 | 3' | -63 | NC_006146.1 | + | 55024 | 0.66 | 0.677131 |
Target: 5'- uGGGGGcgggcgGGAuGGGGGUCGgggCCGGGg- -3' miRNA: 3'- -CCCUCa-----CCUcCCCCUAGCg--GGCCCag -5' |
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28983 | 3' | -63 | NC_006146.1 | + | 56247 | 0.66 | 0.657987 |
Target: 5'- cGGGGGcGGAGGcGGGGcCGUCCucggcGGGg- -3' miRNA: 3'- -CCCUCaCCUCC-CCCUaGCGGG-----CCCag -5' |
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28983 | 3' | -63 | NC_006146.1 | + | 57131 | 0.68 | 0.524795 |
Target: 5'- uGGAa--GAGGGGGGU-GCCCGGGg- -3' miRNA: 3'- cCCUcacCUCCCCCUAgCGGGCCCag -5' |
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28983 | 3' | -63 | NC_006146.1 | + | 60135 | 0.66 | 0.619534 |
Target: 5'- gGGGAGggaccUGGuGGGGGGUgugUGCCaGGGg- -3' miRNA: 3'- -CCCUC-----ACCuCCCCCUA---GCGGgCCCag -5' |
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28983 | 3' | -63 | NC_006146.1 | + | 61252 | 0.66 | 0.63877 |
Target: 5'- gGGGGGUGGugugccauAGaGGGGAgggagaccgauaUCGCCCaGGa- -3' miRNA: 3'- -CCCUCACC--------UC-CCCCU------------AGCGGGcCCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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