miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28984 3' -50.4 NC_006146.1 + 5202 0.66 0.99718
Target:  5'- cCUGGGCCUgGggGAGCU--AGGggUGc -3'
miRNA:   3'- -GACUCGGGgCaaCUUGGguUUCuuAC- -5'
28984 3' -50.4 NC_006146.1 + 100204 0.66 0.996667
Target:  5'- cCUGAGCuCCCGUU---CCCAGcgcAGAAa- -3'
miRNA:   3'- -GACUCG-GGGCAAcuuGGGUU---UCUUac -5'
28984 3' -50.4 NC_006146.1 + 119849 0.66 0.99608
Target:  5'- gUGAugGCCCuUGUccUGAucuCCCGGAGggUGg -3'
miRNA:   3'- gACU--CGGG-GCA--ACUu--GGGUUUCuuAC- -5'
28984 3' -50.4 NC_006146.1 + 50198 0.66 0.99608
Target:  5'- -cGGGCUCgGguaGGCCCGGGGggUGa -3'
miRNA:   3'- gaCUCGGGgCaacUUGGGUUUCuuAC- -5'
28984 3' -50.4 NC_006146.1 + 115239 0.66 0.995412
Target:  5'- -gGAGCCCaGcUGAgagGCCCAGGGAu-- -3'
miRNA:   3'- gaCUCGGGgCaACU---UGGGUUUCUuac -5'
28984 3' -50.4 NC_006146.1 + 69489 0.66 0.995412
Target:  5'- aCUGGGCCCCa--GAACCCucuuuaGGUGg -3'
miRNA:   3'- -GACUCGGGGcaaCUUGGGuuuc--UUAC- -5'
28984 3' -50.4 NC_006146.1 + 134697 0.66 0.99534
Target:  5'- uUGcGCuCCCGggGAGCCCAggugucuGAGAAc- -3'
miRNA:   3'- gACuCG-GGGCaaCUUGGGU-------UUCUUac -5'
28984 3' -50.4 NC_006146.1 + 58825 0.66 0.994653
Target:  5'- -aGAGCCCCGUgaaGAuGCCCGGGc---- -3'
miRNA:   3'- gaCUCGGGGCAa--CU-UGGGUUUcuuac -5'
28984 3' -50.4 NC_006146.1 + 168752 0.67 0.993795
Target:  5'- -cGGGCCCCGcgGGACCCc------- -3'
miRNA:   3'- gaCUCGGGGCaaCUUGGGuuucuuac -5'
28984 3' -50.4 NC_006146.1 + 169684 0.67 0.993795
Target:  5'- -cGGGCCCCGcgGGACCCc------- -3'
miRNA:   3'- gaCUCGGGGCaaCUUGGGuuucuuac -5'
28984 3' -50.4 NC_006146.1 + 170615 0.67 0.993795
Target:  5'- -cGGGCCCCGcgGGACCCc------- -3'
miRNA:   3'- gaCUCGGGGCaaCUUGGGuuucuuac -5'
28984 3' -50.4 NC_006146.1 + 97313 0.67 0.993795
Target:  5'- ---uGCCCCG-UGAGCUCGaccggaggaGAGGAUGg -3'
miRNA:   3'- gacuCGGGGCaACUUGGGU---------UUCUUAC- -5'
28984 3' -50.4 NC_006146.1 + 167820 0.67 0.993795
Target:  5'- -cGGGCCCCGcgGGACCCc------- -3'
miRNA:   3'- gaCUCGGGGCaaCUUGGGuuucuuac -5'
28984 3' -50.4 NC_006146.1 + 120187 0.67 0.993795
Target:  5'- cCUGGGCCuCCGU---GCCCAAGauGUGu -3'
miRNA:   3'- -GACUCGG-GGCAacuUGGGUUUcuUAC- -5'
28984 3' -50.4 NC_006146.1 + 151067 0.67 0.992831
Target:  5'- gCUGAGguCCCUGaUGAGCUgGAAGAAg- -3'
miRNA:   3'- -GACUC--GGGGCaACUUGGgUUUCUUac -5'
28984 3' -50.4 NC_006146.1 + 32300 0.67 0.992831
Target:  5'- -aGAGCUUCGgaUGGGCCCGGGGuugGUGa -3'
miRNA:   3'- gaCUCGGGGCa-ACUUGGGUUUCu--UAC- -5'
28984 3' -50.4 NC_006146.1 + 34145 0.67 0.99175
Target:  5'- -cGGGCCUCccgGAGCCCcggcGAGggUGg -3'
miRNA:   3'- gaCUCGGGGcaaCUUGGGu---UUCuuAC- -5'
28984 3' -50.4 NC_006146.1 + 75718 0.67 0.990545
Target:  5'- -gGAGCCUCGgUGGGCgCCAuAGGAa- -3'
miRNA:   3'- gaCUCGGGGCaACUUG-GGUuUCUUac -5'
28984 3' -50.4 NC_006146.1 + 54664 0.67 0.990545
Target:  5'- -gGGGCCCCGUcguaGAccuCCCAGAcGGUGg -3'
miRNA:   3'- gaCUCGGGGCAa---CUu--GGGUUUcUUAC- -5'
28984 3' -50.4 NC_006146.1 + 25722 0.67 0.989205
Target:  5'- -aGAGCCagccagCGgcUGAACCCGAGGAGg- -3'
miRNA:   3'- gaCUCGGg-----GCa-ACUUGGGUUUCUUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.