miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28984 3' -50.4 NC_006146.1 + 25722 0.67 0.989205
Target:  5'- -aGAGCCagccagCGgcUGAACCCGAGGAGg- -3'
miRNA:   3'- gaCUCGGg-----GCa-ACUUGGGUUUCUUac -5'
28984 3' -50.4 NC_006146.1 + 27381 0.69 0.977832
Target:  5'- -gGGGCCUCGgaGGGCCUGGAGGGc- -3'
miRNA:   3'- gaCUCGGGGCaaCUUGGGUUUCUUac -5'
28984 3' -50.4 NC_006146.1 + 28218 0.69 0.975296
Target:  5'- -aGAGCCCuccggCGgccGGACCCGAGGAGg- -3'
miRNA:   3'- gaCUCGGG-----GCaa-CUUGGGUUUCUUac -5'
28984 3' -50.4 NC_006146.1 + 28724 1.08 0.011501
Target:  5'- uCUGAGCCCCGUUGAACCCAAAGAAUGu -3'
miRNA:   3'- -GACUCGGGGCAACUUGGGUUUCUUAC- -5'
28984 3' -50.4 NC_006146.1 + 28800 0.67 0.989205
Target:  5'- -aGAGCCagccagCGgcUGAACCCGAGGAGg- -3'
miRNA:   3'- gaCUCGGg-----GCa-ACUUGGGUUUCUUac -5'
28984 3' -50.4 NC_006146.1 + 32300 0.67 0.992831
Target:  5'- -aGAGCUUCGgaUGGGCCCGGGGuugGUGa -3'
miRNA:   3'- gaCUCGGGGCa-ACUUGGGUUUCu--UAC- -5'
28984 3' -50.4 NC_006146.1 + 34145 0.67 0.99175
Target:  5'- -cGGGCCUCccgGAGCCCcggcGAGggUGg -3'
miRNA:   3'- gaCUCGGGGcaaCUUGGGu---UUCuuAC- -5'
28984 3' -50.4 NC_006146.1 + 34578 0.7 0.947043
Target:  5'- uCUGcGCCCCGUUauACCUAGuGggUGg -3'
miRNA:   3'- -GACuCGGGGCAAcuUGGGUUuCuuAC- -5'
28984 3' -50.4 NC_006146.1 + 42218 0.68 0.987722
Target:  5'- gUGAGCCC----GGGCCCAGAGGGa- -3'
miRNA:   3'- gACUCGGGgcaaCUUGGGUUUCUUac -5'
28984 3' -50.4 NC_006146.1 + 43691 0.68 0.988333
Target:  5'- gCUGGGCCCCGccgccgGAGCcggugucaacggccgCCGAGGAGg- -3'
miRNA:   3'- -GACUCGGGGCaa----CUUG---------------GGUUUCUUac -5'
28984 3' -50.4 NC_006146.1 + 44273 0.7 0.963027
Target:  5'- -cGGGCCCCGggGuguGCCCAccGAc-- -3'
miRNA:   3'- gaCUCGGGGCaaCu--UGGGUuuCUuac -5'
28984 3' -50.4 NC_006146.1 + 50198 0.66 0.99608
Target:  5'- -cGGGCUCgGguaGGCCCGGGGggUGa -3'
miRNA:   3'- gaCUCGGGgCaacUUGGGUUUCuuAC- -5'
28984 3' -50.4 NC_006146.1 + 52272 0.72 0.889431
Target:  5'- aCUGGGCCCCGggc-GCCCccacguacuGGAGGAUGu -3'
miRNA:   3'- -GACUCGGGGCaacuUGGG---------UUUCUUAC- -5'
28984 3' -50.4 NC_006146.1 + 53828 0.75 0.750463
Target:  5'- aCUGAGCCCCGcgauccUGccGACCCGGAGAc-- -3'
miRNA:   3'- -GACUCGGGGCa-----AC--UUGGGUUUCUuac -5'
28984 3' -50.4 NC_006146.1 + 54136 0.68 0.986086
Target:  5'- gUGAGCCCCugcGUccGGACCuCGAGGAGc- -3'
miRNA:   3'- gACUCGGGG---CAa-CUUGG-GUUUCUUac -5'
28984 3' -50.4 NC_006146.1 + 54664 0.67 0.990545
Target:  5'- -gGGGCCCCGUcguaGAccuCCCAGAcGGUGg -3'
miRNA:   3'- gaCUCGGGGCAa---CUu--GGGUUUcUUAC- -5'
28984 3' -50.4 NC_006146.1 + 57523 0.68 0.986086
Target:  5'- -gGGGCCCCGcc---CCCAGAGAGc- -3'
miRNA:   3'- gaCUCGGGGCaacuuGGGUUUCUUac -5'
28984 3' -50.4 NC_006146.1 + 58825 0.66 0.994653
Target:  5'- -aGAGCCCCGUgaaGAuGCCCGGGc---- -3'
miRNA:   3'- gaCUCGGGGCAa--CU-UGGGUUUcuuac -5'
28984 3' -50.4 NC_006146.1 + 67569 0.69 0.97227
Target:  5'- -cGAGCCCCccuccccguacucGUgGGACCCGgaccccGAGGAUGg -3'
miRNA:   3'- gaCUCGGGG-------------CAaCUUGGGU------UUCUUAC- -5'
28984 3' -50.4 NC_006146.1 + 67907 0.73 0.851385
Target:  5'- aCUGGGCCUCGUgGGAgCCGAAGGu-- -3'
miRNA:   3'- -GACUCGGGGCAaCUUgGGUUUCUuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.