miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28984 3' -50.4 NC_006146.1 + 69489 0.66 0.995412
Target:  5'- aCUGGGCCCCa--GAACCCucuuuaGGUGg -3'
miRNA:   3'- -GACUCGGGGcaaCUUGGGuuuc--UUAC- -5'
28984 3' -50.4 NC_006146.1 + 75718 0.67 0.990545
Target:  5'- -gGAGCCUCGgUGGGCgCCAuAGGAa- -3'
miRNA:   3'- gaCUCGGGGCaACUUG-GGUuUCUUac -5'
28984 3' -50.4 NC_006146.1 + 82758 0.7 0.963027
Target:  5'- -gGAGgC-CGUUGGGCCCAGGGggUu -3'
miRNA:   3'- gaCUCgGgGCAACUUGGGUUUCuuAc -5'
28984 3' -50.4 NC_006146.1 + 97313 0.67 0.993795
Target:  5'- ---uGCCCCG-UGAGCUCGaccggaggaGAGGAUGg -3'
miRNA:   3'- gacuCGGGGCaACUUGGGU---------UUCUUAC- -5'
28984 3' -50.4 NC_006146.1 + 100204 0.66 0.996667
Target:  5'- cCUGAGCuCCCGUU---CCCAGcgcAGAAa- -3'
miRNA:   3'- -GACUCG-GGGCAAcuuGGGUU---UCUUac -5'
28984 3' -50.4 NC_006146.1 + 105876 0.69 0.972555
Target:  5'- gUGGGCCCUG--GGACCguaGAAGAGUGc -3'
miRNA:   3'- gACUCGGGGCaaCUUGGg--UUUCUUAC- -5'
28984 3' -50.4 NC_006146.1 + 108349 0.7 0.963027
Target:  5'- -gGAGCCCCGc-GGACCCAcauGAAc- -3'
miRNA:   3'- gaCUCGGGGCaaCUUGGGUuu-CUUac -5'
28984 3' -50.4 NC_006146.1 + 115239 0.66 0.995412
Target:  5'- -gGAGCCCaGcUGAgagGCCCAGGGAu-- -3'
miRNA:   3'- gaCUCGGGgCaACU---UGGGUUUCUuac -5'
28984 3' -50.4 NC_006146.1 + 119527 0.7 0.963027
Target:  5'- cCUGGGCgCCGccgggagGGGCCCGGGGGAg- -3'
miRNA:   3'- -GACUCGgGGCaa-----CUUGGGUUUCUUac -5'
28984 3' -50.4 NC_006146.1 + 119849 0.66 0.99608
Target:  5'- gUGAugGCCCuUGUccUGAucuCCCGGAGggUGg -3'
miRNA:   3'- gACU--CGGG-GCA--ACUu--GGGUUUCuuAC- -5'
28984 3' -50.4 NC_006146.1 + 120187 0.67 0.993795
Target:  5'- cCUGGGCCuCCGU---GCCCAAGauGUGu -3'
miRNA:   3'- -GACUCGG-GGCAacuUGGGUUUcuUAC- -5'
28984 3' -50.4 NC_006146.1 + 125806 0.69 0.977832
Target:  5'- cCUGAGgCCCGccaGAccaagACCCAGAGGAa- -3'
miRNA:   3'- -GACUCgGGGCaa-CU-----UGGGUUUCUUac -5'
28984 3' -50.4 NC_006146.1 + 128453 0.71 0.927061
Target:  5'- gUGGGCCUcaCGUagUGGGCCCAGAGGu-- -3'
miRNA:   3'- gACUCGGG--GCA--ACUUGGGUUUCUuac -5'
28984 3' -50.4 NC_006146.1 + 134697 0.66 0.99534
Target:  5'- uUGcGCuCCCGggGAGCCCAggugucuGAGAAc- -3'
miRNA:   3'- gACuCG-GGGCaaCUUGGGU-------UUCUUac -5'
28984 3' -50.4 NC_006146.1 + 143290 0.7 0.951406
Target:  5'- cCUG-GCCaCCcagUGGACCCGGAGAGUc -3'
miRNA:   3'- -GACuCGG-GGca-ACUUGGGUUUCUUAc -5'
28984 3' -50.4 NC_006146.1 + 148024 0.67 0.989063
Target:  5'- -gGGGCCuCUGUUGAgaucggcguugggGCCCAugaugaugagGAGGAUGa -3'
miRNA:   3'- gaCUCGG-GGCAACU-------------UGGGU----------UUCUUAC- -5'
28984 3' -50.4 NC_006146.1 + 150291 0.68 0.982319
Target:  5'- -gGuGCCCCcggUGAGCCUGAAGGAc- -3'
miRNA:   3'- gaCuCGGGGca-ACUUGGGUUUCUUac -5'
28984 3' -50.4 NC_006146.1 + 151067 0.67 0.992831
Target:  5'- gCUGAGguCCCUGaUGAGCUgGAAGAAg- -3'
miRNA:   3'- -GACUC--GGGGCaACUUGGgUUUCUUac -5'
28984 3' -50.4 NC_006146.1 + 157160 0.72 0.902983
Target:  5'- gUGGGCCCgGggGAGCCCAGGa---- -3'
miRNA:   3'- gACUCGGGgCaaCUUGGGUUUcuuac -5'
28984 3' -50.4 NC_006146.1 + 158733 0.68 0.98017
Target:  5'- -gGAGCCCCag-GGACCCcGGGAc-- -3'
miRNA:   3'- gaCUCGGGGcaaCUUGGGuUUCUuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.