Results 1 - 20 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28984 | 3' | -50.4 | NC_006146.1 | + | 170815 | 0.69 | 0.972555 |
Target: 5'- -gGAGCCCgGgaaGACCCGGGGGcgGg -3' miRNA: 3'- gaCUCGGGgCaacUUGGGUUUCUuaC- -5' |
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28984 | 3' | -50.4 | NC_006146.1 | + | 170615 | 0.67 | 0.993795 |
Target: 5'- -cGGGCCCCGcgGGACCCc------- -3' miRNA: 3'- gaCUCGGGGCaaCUUGGGuuucuuac -5' |
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28984 | 3' | -50.4 | NC_006146.1 | + | 170570 | 0.68 | 0.987722 |
Target: 5'- ---uGCuCCCGUUG-GCCgGGAGAAUGa -3' miRNA: 3'- gacuCG-GGGCAACuUGGgUUUCUUAC- -5' |
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28984 | 3' | -50.4 | NC_006146.1 | + | 169884 | 0.69 | 0.972555 |
Target: 5'- -gGAGCCCgGgaaGACCCGGGGGcgGg -3' miRNA: 3'- gaCUCGGGgCaacUUGGGUUUCUuaC- -5' |
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28984 | 3' | -50.4 | NC_006146.1 | + | 169746 | 0.76 | 0.709717 |
Target: 5'- -gGAGCCCCGggGcGGCCCGGGGAc-- -3' miRNA: 3'- gaCUCGGGGCaaC-UUGGGUUUCUuac -5' |
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28984 | 3' | -50.4 | NC_006146.1 | + | 169684 | 0.67 | 0.993795 |
Target: 5'- -cGGGCCCCGcgGGACCCc------- -3' miRNA: 3'- gaCUCGGGGCaaCUUGGGuuucuuac -5' |
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28984 | 3' | -50.4 | NC_006146.1 | + | 168952 | 0.69 | 0.972555 |
Target: 5'- -gGAGCCCgGgaaGACCCGGGGGcgGg -3' miRNA: 3'- gaCUCGGGgCaacUUGGGUUUCUuaC- -5' |
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28984 | 3' | -50.4 | NC_006146.1 | + | 168814 | 0.76 | 0.709717 |
Target: 5'- -gGAGCCCCGggGcGGCCCGGGGAc-- -3' miRNA: 3'- gaCUCGGGGCaaC-UUGGGUUUCUuac -5' |
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28984 | 3' | -50.4 | NC_006146.1 | + | 168752 | 0.67 | 0.993795 |
Target: 5'- -cGGGCCCCGcgGGACCCc------- -3' miRNA: 3'- gaCUCGGGGCaaCUUGGGuuucuuac -5' |
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28984 | 3' | -50.4 | NC_006146.1 | + | 168020 | 0.69 | 0.972555 |
Target: 5'- -gGAGCCCgGgaaGACCCGGGGGcgGg -3' miRNA: 3'- gaCUCGGGgCaacUUGGGUUUCUuaC- -5' |
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28984 | 3' | -50.4 | NC_006146.1 | + | 167882 | 0.76 | 0.709717 |
Target: 5'- -gGAGCCCCGggGcGGCCCGGGGAc-- -3' miRNA: 3'- gaCUCGGGGCaaC-UUGGGUUUCUuac -5' |
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28984 | 3' | -50.4 | NC_006146.1 | + | 167820 | 0.67 | 0.993795 |
Target: 5'- -cGGGCCCCGcgGGACCCc------- -3' miRNA: 3'- gaCUCGGGGCaaCUUGGGuuucuuac -5' |
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28984 | 3' | -50.4 | NC_006146.1 | + | 163056 | 0.68 | 0.982319 |
Target: 5'- gCUG-GCaCCCGcUGGACCCGgcccuGGGggUGu -3' miRNA: 3'- -GACuCG-GGGCaACUUGGGU-----UUCuuAC- -5' |
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28984 | 3' | -50.4 | NC_006146.1 | + | 159021 | 0.75 | 0.78942 |
Target: 5'- -cGGGCCCCGUUGGugCCAGu----- -3' miRNA: 3'- gaCUCGGGGCAACUugGGUUucuuac -5' |
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28984 | 3' | -50.4 | NC_006146.1 | + | 158733 | 0.68 | 0.98017 |
Target: 5'- -gGAGCCCCag-GGACCCcGGGAc-- -3' miRNA: 3'- gaCUCGGGGcaaCUUGGGuUUCUuac -5' |
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28984 | 3' | -50.4 | NC_006146.1 | + | 157160 | 0.72 | 0.902983 |
Target: 5'- gUGGGCCCgGggGAGCCCAGGa---- -3' miRNA: 3'- gACUCGGGgCaaCUUGGGUUUcuuac -5' |
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28984 | 3' | -50.4 | NC_006146.1 | + | 151067 | 0.67 | 0.992831 |
Target: 5'- gCUGAGguCCCUGaUGAGCUgGAAGAAg- -3' miRNA: 3'- -GACUC--GGGGCaACUUGGgUUUCUUac -5' |
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28984 | 3' | -50.4 | NC_006146.1 | + | 150291 | 0.68 | 0.982319 |
Target: 5'- -gGuGCCCCcggUGAGCCUGAAGGAc- -3' miRNA: 3'- gaCuCGGGGca-ACUUGGGUUUCUUac -5' |
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28984 | 3' | -50.4 | NC_006146.1 | + | 148024 | 0.67 | 0.989063 |
Target: 5'- -gGGGCCuCUGUUGAgaucggcguugggGCCCAugaugaugagGAGGAUGa -3' miRNA: 3'- gaCUCGG-GGCAACU-------------UGGGU----------UUCUUAC- -5' |
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28984 | 3' | -50.4 | NC_006146.1 | + | 143290 | 0.7 | 0.951406 |
Target: 5'- cCUG-GCCaCCcagUGGACCCGGAGAGUc -3' miRNA: 3'- -GACuCGG-GGca-ACUUGGGUUUCUUAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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