miRNA display CGI


Results 1 - 20 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28984 3' -50.4 NC_006146.1 + 163056 0.68 0.982319
Target:  5'- gCUG-GCaCCCGcUGGACCCGgcccuGGGggUGu -3'
miRNA:   3'- -GACuCG-GGGCaACUUGGGU-----UUCuuAC- -5'
28984 3' -50.4 NC_006146.1 + 19566 0.67 0.989205
Target:  5'- -aGAGCCagccagCGgcUGAACCCGAGGAGg- -3'
miRNA:   3'- gaCUCGGg-----GCa-ACUUGGGUUUCUUac -5'
28984 3' -50.4 NC_006146.1 + 22644 0.67 0.989205
Target:  5'- -aGAGCCagccagCGgcUGAACCCGAGGAGg- -3'
miRNA:   3'- gaCUCGGg-----GCa-ACUUGGGUUUCUUac -5'
28984 3' -50.4 NC_006146.1 + 25722 0.67 0.989205
Target:  5'- -aGAGCCagccagCGgcUGAACCCGAGGAGg- -3'
miRNA:   3'- gaCUCGGg-----GCa-ACUUGGGUUUCUUac -5'
28984 3' -50.4 NC_006146.1 + 28800 0.67 0.989205
Target:  5'- -aGAGCCagccagCGgcUGAACCCGAGGAGg- -3'
miRNA:   3'- gaCUCGGg-----GCa-ACUUGGGUUUCUUac -5'
28984 3' -50.4 NC_006146.1 + 43691 0.68 0.988333
Target:  5'- gCUGGGCCCCGccgccgGAGCcggugucaacggccgCCGAGGAGg- -3'
miRNA:   3'- -GACUCGGGGCaa----CUUG---------------GGUUUCUUac -5'
28984 3' -50.4 NC_006146.1 + 42218 0.68 0.987722
Target:  5'- gUGAGCCC----GGGCCCAGAGGGa- -3'
miRNA:   3'- gACUCGGGgcaaCUUGGGUUUCUUac -5'
28984 3' -50.4 NC_006146.1 + 54136 0.68 0.986086
Target:  5'- gUGAGCCCCugcGUccGGACCuCGAGGAGc- -3'
miRNA:   3'- gACUCGGGG---CAa-CUUGG-GUUUCUUac -5'
28984 3' -50.4 NC_006146.1 + 57523 0.68 0.986086
Target:  5'- -gGGGCCCCGcc---CCCAGAGAGc- -3'
miRNA:   3'- gaCUCGGGGCaacuuGGGUUUCUUac -5'
28984 3' -50.4 NC_006146.1 + 16488 0.67 0.989205
Target:  5'- -aGAGCCagccagCGgcUGAACCCGAGGAGg- -3'
miRNA:   3'- gaCUCGGg-----GCa-ACUUGGGUUUCUUac -5'
28984 3' -50.4 NC_006146.1 + 13411 0.67 0.989205
Target:  5'- -aGAGCCagccagCGgcUGAACCCGAGGAGg- -3'
miRNA:   3'- gaCUCGGg-----GCa-ACUUGGGUUUCUUac -5'
28984 3' -50.4 NC_006146.1 + 75718 0.67 0.990545
Target:  5'- -gGAGCCUCGgUGGGCgCCAuAGGAa- -3'
miRNA:   3'- gaCUCGGGGCaACUUG-GGUuUCUUac -5'
28984 3' -50.4 NC_006146.1 + 69489 0.66 0.995412
Target:  5'- aCUGGGCCCCa--GAACCCucuuuaGGUGg -3'
miRNA:   3'- -GACUCGGGGcaaCUUGGGuuuc--UUAC- -5'
28984 3' -50.4 NC_006146.1 + 58825 0.66 0.994653
Target:  5'- -aGAGCCCCGUgaaGAuGCCCGGGc---- -3'
miRNA:   3'- gaCUCGGGGCAa--CU-UGGGUUUcuuac -5'
28984 3' -50.4 NC_006146.1 + 120187 0.67 0.993795
Target:  5'- cCUGGGCCuCCGU---GCCCAAGauGUGu -3'
miRNA:   3'- -GACUCGG-GGCAacuUGGGUUUcuUAC- -5'
28984 3' -50.4 NC_006146.1 + 167820 0.67 0.993795
Target:  5'- -cGGGCCCCGcgGGACCCc------- -3'
miRNA:   3'- gaCUCGGGGCaaCUUGGGuuucuuac -5'
28984 3' -50.4 NC_006146.1 + 168752 0.67 0.993795
Target:  5'- -cGGGCCCCGcgGGACCCc------- -3'
miRNA:   3'- gaCUCGGGGCaaCUUGGGuuucuuac -5'
28984 3' -50.4 NC_006146.1 + 169684 0.67 0.993795
Target:  5'- -cGGGCCCCGcgGGACCCc------- -3'
miRNA:   3'- gaCUCGGGGCaaCUUGGGuuucuuac -5'
28984 3' -50.4 NC_006146.1 + 170615 0.67 0.993795
Target:  5'- -cGGGCCCCGcgGGACCCc------- -3'
miRNA:   3'- gaCUCGGGGCaaCUUGGGuuucuuac -5'
28984 3' -50.4 NC_006146.1 + 32300 0.67 0.992831
Target:  5'- -aGAGCUUCGgaUGGGCCCGGGGuugGUGa -3'
miRNA:   3'- gaCUCGGGGCa-ACUUGGGUUUCu--UAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.