miRNA display CGI


Results 21 - 40 of 235 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28984 5' -69.1 NC_006146.1 + 17016 0.69 0.243804
Target:  5'- gGCgGCUCUCccGGGCugCCGGGGUCCCUc -3'
miRNA:   3'- -CGgCGGGAGc-CCCG--GGUCCCGGGGAu -5'
28984 5' -69.1 NC_006146.1 + 18306 0.69 0.243804
Target:  5'- cCCGagaCCUgGGGGCCC-GGGCCUg-- -3'
miRNA:   3'- cGGCg--GGAgCCCCGGGuCCCGGGgau -5'
28984 5' -69.1 NC_006146.1 + 18614 0.67 0.302921
Target:  5'- cGCCgggGCCUUUcaGGCCCucGGGCCCCUc -3'
miRNA:   3'- -CGG---CGGGAGccCCGGGu-CCCGGGGAu -5'
28984 5' -69.1 NC_006146.1 + 18826 0.67 0.296544
Target:  5'- aGCCggaGUCCagaGGGGCCCgAGGGCCUg-- -3'
miRNA:   3'- -CGG---CGGGag-CCCCGGG-UCCCGGGgau -5'
28984 5' -69.1 NC_006146.1 + 19261 0.66 0.350512
Target:  5'- gGUCGCCaggCGGGGUCC--GGCCUCUc -3'
miRNA:   3'- -CGGCGGga-GCCCCGGGucCCGGGGAu -5'
28984 5' -69.1 NC_006146.1 + 19286 0.66 0.350512
Target:  5'- gGCCaCCgggCGGGG-CCAGGGCCuCCa- -3'
miRNA:   3'- -CGGcGGga-GCCCCgGGUCCCGG-GGau -5'
28984 5' -69.1 NC_006146.1 + 19406 0.7 0.199099
Target:  5'- gGCgGCgCCUUGGGGCCCGGaGUCUCg- -3'
miRNA:   3'- -CGgCG-GGAGCCCCGGGUCcCGGGGau -5'
28984 5' -69.1 NC_006146.1 + 19526 1.07 0.000303
Target:  5'- aGCCGCCCUCGGGGCCCAGGGCCCCUAg -3'
miRNA:   3'- -CGGCGGGAGCCCCGGGUCCCGGGGAU- -5'
28984 5' -69.1 NC_006146.1 + 19736 0.8 0.038184
Target:  5'- uCCGUCCUCuggacuaGGGGCCCuGGGCCCCg- -3'
miRNA:   3'- cGGCGGGAG-------CCCCGGGuCCCGGGGau -5'
28984 5' -69.1 NC_006146.1 + 19981 0.67 0.302922
Target:  5'- gGCUGCU---GGGGaCCAGGGCCuCCUGg -3'
miRNA:   3'- -CGGCGGgagCCCCgGGUCCCGG-GGAU- -5'
28984 5' -69.1 NC_006146.1 + 20094 0.69 0.243804
Target:  5'- gGCgGCUCUCccGGGCugCCGGGGUCCCUc -3'
miRNA:   3'- -CGgCGGGAGc-CCCG--GGUCCCGGGGAu -5'
28984 5' -69.1 NC_006146.1 + 21384 0.69 0.243804
Target:  5'- cCCGagaCCUgGGGGCCC-GGGCCUg-- -3'
miRNA:   3'- cGGCg--GGAgCCCCGGGuCCCGGGgau -5'
28984 5' -69.1 NC_006146.1 + 21692 0.67 0.302921
Target:  5'- cGCCgggGCCUUUcaGGCCCucGGGCCCCUc -3'
miRNA:   3'- -CGG---CGGGAGccCCGGGu-CCCGGGGAu -5'
28984 5' -69.1 NC_006146.1 + 21904 0.67 0.296544
Target:  5'- aGCCggaGUCCagaGGGGCCCgAGGGCCUg-- -3'
miRNA:   3'- -CGG---CGGGag-CCCCGGG-UCCCGGGgau -5'
28984 5' -69.1 NC_006146.1 + 22339 0.66 0.350512
Target:  5'- gGUCGCCaggCGGGGUCC--GGCCUCUc -3'
miRNA:   3'- -CGGCGGga-GCCCCGGGucCCGGGGAu -5'
28984 5' -69.1 NC_006146.1 + 22364 0.66 0.350512
Target:  5'- gGCCaCCgggCGGGG-CCAGGGCCuCCa- -3'
miRNA:   3'- -CGGcGGga-GCCCCgGGUCCCGG-GGau -5'
28984 5' -69.1 NC_006146.1 + 22481 0.71 0.169427
Target:  5'- gGCCG-CCUUGGGGCCCGGaGUCUCg- -3'
miRNA:   3'- -CGGCgGGAGCCCCGGGUCcCGGGGau -5'
28984 5' -69.1 NC_006146.1 + 22604 1.07 0.000303
Target:  5'- aGCCGCCCUCGGGGCCCAGGGCCCCUAg -3'
miRNA:   3'- -CGGCGGGAGCCCCGGGUCCCGGGGAU- -5'
28984 5' -69.1 NC_006146.1 + 22814 0.8 0.038184
Target:  5'- uCCGUCCUCuggacuaGGGGCCCuGGGCCCCg- -3'
miRNA:   3'- cGGCGGGAG-------CCCCGGGuCCCGGGGau -5'
28984 5' -69.1 NC_006146.1 + 23059 0.67 0.302922
Target:  5'- gGCUGCU---GGGGaCCAGGGCCuCCUGg -3'
miRNA:   3'- -CGGCGGgagCCCCgGGUCCCGG-GGAU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.