Results 1 - 20 of 235 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28984 | 5' | -69.1 | NC_006146.1 | + | 13370 | 1.07 | 0.000303 |
Target: 5'- aGCCGCCCUCGGGGCCCAGGGCCCCUAg -3' miRNA: 3'- -CGGCGGGAGCCCCGGGUCCCGGGGAU- -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 135999 | 0.76 | 0.074885 |
Target: 5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3' miRNA: 3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 136185 | 0.76 | 0.074885 |
Target: 5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3' miRNA: 3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 170201 | 0.66 | 0.372475 |
Target: 5'- gGCCgggGCCUggcgGGGGCCagcgCGGGGUCCCg- -3' miRNA: 3'- -CGG---CGGGag--CCCCGG----GUCCCGGGGau -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 25682 | 1.07 | 0.000303 |
Target: 5'- aGCCGCCCUCGGGGCCCAGGGCCCCUAg -3' miRNA: 3'- -CGGCGGGAGCCCCGGGUCCCGGGGAU- -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 28760 | 1.07 | 0.000303 |
Target: 5'- aGCCGCCCUCGGGGCCCAGGGCCCCUAg -3' miRNA: 3'- -CGGCGGGAGCCCCGGGUCCCGGGGAU- -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 5235 | 0.76 | 0.071289 |
Target: 5'- uGCCGgCCUCGGGGCUguGGGgUCCa- -3' miRNA: 3'- -CGGCgGGAGCCCCGGguCCCgGGGau -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 135721 | 0.76 | 0.073066 |
Target: 5'- cGCUGCCCguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3' miRNA: 3'- -CGGCGGG----------AGCCCCGG------GUCC-CGGGGAU- -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 135349 | 0.76 | 0.074885 |
Target: 5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3' miRNA: 3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 135906 | 0.76 | 0.074885 |
Target: 5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3' miRNA: 3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 135535 | 0.76 | 0.074885 |
Target: 5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3' miRNA: 3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 135256 | 0.76 | 0.074885 |
Target: 5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3' miRNA: 3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 16448 | 1.07 | 0.000303 |
Target: 5'- aGCCGCCCUCGGGGCCCAGGGCCCCUAg -3' miRNA: 3'- -CGGCGGGAGCCCCGGGUCCCGGGGAU- -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 135628 | 0.76 | 0.074885 |
Target: 5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3' miRNA: 3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 19526 | 1.07 | 0.000303 |
Target: 5'- aGCCGCCCUCGGGGCCCAGGGCCCCUAg -3' miRNA: 3'- -CGGCGGGAGCCCCGGGUCCCGGGGAU- -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 135163 | 0.76 | 0.074885 |
Target: 5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3' miRNA: 3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 135813 | 0.76 | 0.074885 |
Target: 5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3' miRNA: 3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 136092 | 0.76 | 0.074885 |
Target: 5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3' miRNA: 3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 22604 | 1.07 | 0.000303 |
Target: 5'- aGCCGCCCUCGGGGCCCAGGGCCCCUAg -3' miRNA: 3'- -CGGCGGGAGCCCCGGGUCCCGGGGAU- -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 149935 | 0.76 | 0.067859 |
Target: 5'- aGCCuGCCCUCGGGGUUgaGGGGCgCCCa- -3' miRNA: 3'- -CGG-CGGGAGCCCCGGg-UCCCG-GGGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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