miRNA display CGI


Results 21 - 40 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28984 5' -69.1 NC_006146.1 + 136464 0.76 0.074885
Target:  5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3'
miRNA:   3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5'
28984 5' -69.1 NC_006146.1 + 136185 0.76 0.074885
Target:  5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3'
miRNA:   3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5'
28984 5' -69.1 NC_006146.1 + 135256 0.76 0.074885
Target:  5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3'
miRNA:   3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5'
28984 5' -69.1 NC_006146.1 + 22604 1.07 0.000303
Target:  5'- aGCCGCCCUCGGGGCCCAGGGCCCCUAg -3'
miRNA:   3'- -CGGCGGGAGCCCCGGGUCCCGGGGAU- -5'
28984 5' -69.1 NC_006146.1 + 159270 0.75 0.080607
Target:  5'- cGCCGCCa-CGcGGGCCuCGGGGCCCUc- -3'
miRNA:   3'- -CGGCGGgaGC-CCCGG-GUCCCGGGGau -5'
28984 5' -69.1 NC_006146.1 + 136928 0.76 0.074885
Target:  5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3'
miRNA:   3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5'
28984 5' -69.1 NC_006146.1 + 135999 0.76 0.074885
Target:  5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3'
miRNA:   3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5'
28984 5' -69.1 NC_006146.1 + 19526 1.07 0.000303
Target:  5'- aGCCGCCCUCGGGGCCCAGGGCCCCUAg -3'
miRNA:   3'- -CGGCGGGAGCCCCGGGUCCCGGGGAU- -5'
28984 5' -69.1 NC_006146.1 + 136835 0.76 0.074885
Target:  5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3'
miRNA:   3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5'
28984 5' -69.1 NC_006146.1 + 16448 1.07 0.000303
Target:  5'- aGCCGCCCUCGGGGCCCAGGGCCCCUAg -3'
miRNA:   3'- -CGGCGGGAGCCCCGGGUCCCGGGGAU- -5'
28984 5' -69.1 NC_006146.1 + 136092 0.76 0.074885
Target:  5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3'
miRNA:   3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5'
28984 5' -69.1 NC_006146.1 + 136557 0.76 0.074885
Target:  5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3'
miRNA:   3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5'
28984 5' -69.1 NC_006146.1 + 135628 0.76 0.074885
Target:  5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3'
miRNA:   3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5'
28984 5' -69.1 NC_006146.1 + 135349 0.76 0.074885
Target:  5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3'
miRNA:   3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5'
28984 5' -69.1 NC_006146.1 + 5235 0.76 0.071289
Target:  5'- uGCCGgCCUCGGGGCUguGGGgUCCa- -3'
miRNA:   3'- -CGGCgGGAGCCCCGGguCCCgGGGau -5'
28984 5' -69.1 NC_006146.1 + 25682 1.07 0.000303
Target:  5'- aGCCGCCCUCGGGGCCCAGGGCCCCUAg -3'
miRNA:   3'- -CGGCGGGAGCCCCGGGUCCCGGGGAU- -5'
28984 5' -69.1 NC_006146.1 + 94503 0.73 0.118837
Target:  5'- cGCCGCCgUCGGcGCCCccGGUCCCUc -3'
miRNA:   3'- -CGGCGGgAGCCcCGGGucCCGGGGAu -5'
28984 5' -69.1 NC_006146.1 + 157770 0.75 0.084651
Target:  5'- uGCUcUCCUCGuGGGCCCGGGaGCCCCc- -3'
miRNA:   3'- -CGGcGGGAGC-CCCGGGUCC-CGGGGau -5'
28984 5' -69.1 NC_006146.1 + 137300 0.76 0.074885
Target:  5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3'
miRNA:   3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5'
28984 5' -69.1 NC_006146.1 + 137021 0.76 0.074885
Target:  5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3'
miRNA:   3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.