Results 41 - 60 of 235 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28984 | 5' | -69.1 | NC_006146.1 | + | 137486 | 0.76 | 0.074885 |
Target: 5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3' miRNA: 3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 135999 | 0.76 | 0.074885 |
Target: 5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3' miRNA: 3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 19526 | 1.07 | 0.000303 |
Target: 5'- aGCCGCCCUCGGGGCCCAGGGCCCCUAg -3' miRNA: 3'- -CGGCGGGAGCCCCGGGUCCCGGGGAU- -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 137393 | 0.76 | 0.074885 |
Target: 5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3' miRNA: 3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 16448 | 1.07 | 0.000303 |
Target: 5'- aGCCGCCCUCGGGGCCCAGGGCCCCUAg -3' miRNA: 3'- -CGGCGGGAGCCCCGGGUCCCGGGGAU- -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 108961 | 0.69 | 0.22248 |
Target: 5'- aCCGUCC-CGuggaccaGGGCCCuGGaGCCCCUGa -3' miRNA: 3'- cGGCGGGaGC-------CCCGGGuCC-CGGGGAU- -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 25682 | 1.07 | 0.000303 |
Target: 5'- aGCCGCCCUCGGGGCCCAGGGCCCCUAg -3' miRNA: 3'- -CGGCGGGAGCCCCGGGUCCCGGGGAU- -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 155780 | 0.7 | 0.185864 |
Target: 5'- cGCCGCagaagagccgCUCGGuGGCCCugGGGGCCaCCg- -3' miRNA: 3'- -CGGCGg---------GAGCC-CCGGG--UCCCGG-GGau -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 169460 | 0.7 | 0.180373 |
Target: 5'- gGCCGggccucCCCUgGGGGCCUcgggggcggaggggGGGGUCCCg- -3' miRNA: 3'- -CGGC------GGGAgCCCCGGG--------------UCCCGGGGau -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 33430 | 0.71 | 0.157966 |
Target: 5'- cGCCGCCgCUCGGu-CCUGGGGCUCCg- -3' miRNA: 3'- -CGGCGG-GAGCCccGGGUCCCGGGGau -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 33184 | 0.72 | 0.137125 |
Target: 5'- cGCCGCCgCUCGguccuGGGCCUccGGGuGCUCCUGg -3' miRNA: 3'- -CGGCGG-GAGC-----CCCGGG--UCC-CGGGGAU- -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 94503 | 0.73 | 0.118837 |
Target: 5'- cGCCGCCgUCGGcGCCCccGGUCCCUc -3' miRNA: 3'- -CGGCGGgAGCCcCGGGucCCGGGGAu -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 157770 | 0.75 | 0.084651 |
Target: 5'- uGCUcUCCUCGuGGGCCCGGGaGCCCCc- -3' miRNA: 3'- -CGGcGGGAGC-CCCGGGUCC-CGGGGau -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 137114 | 0.76 | 0.074885 |
Target: 5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3' miRNA: 3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 136835 | 0.76 | 0.074885 |
Target: 5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3' miRNA: 3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 136464 | 0.76 | 0.074885 |
Target: 5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3' miRNA: 3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 136185 | 0.76 | 0.074885 |
Target: 5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3' miRNA: 3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 135628 | 0.76 | 0.074885 |
Target: 5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3' miRNA: 3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 135349 | 0.76 | 0.074885 |
Target: 5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3' miRNA: 3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 5235 | 0.76 | 0.071289 |
Target: 5'- uGCCGgCCUCGGGGCUguGGGgUCCa- -3' miRNA: 3'- -CGGCgGGAGCCCCGGguCCCgGGGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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