Results 1 - 20 of 235 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28984 | 5' | -69.1 | NC_006146.1 | + | 57543 | 0.66 | 0.350512 |
Target: 5'- aGCCuCCCUCaccgacaCCCGGGGCCCCg- -3' miRNA: 3'- -CGGcGGGAGcccc---GGGUCCCGGGGau -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 170185 | 0.66 | 0.35773 |
Target: 5'- cGCCGCCCccCGGGaCCCcGGGCgcgcgccggccuCCCg- -3' miRNA: 3'- -CGGCGGGa-GCCCcGGGuCCCG------------GGGau -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 39020 | 0.66 | 0.35773 |
Target: 5'- aGCUGCCC-Ca-GGCUCAGGGCCUg-- -3' miRNA: 3'- -CGGCGGGaGccCCGGGUCCCGGGgau -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 13130 | 0.66 | 0.350512 |
Target: 5'- gGCCaCCgggCGGGG-CCAGGGCCuCCa- -3' miRNA: 3'- -CGGcGGga-GCCCCgGGUCCCGG-GGau -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 16208 | 0.66 | 0.350512 |
Target: 5'- gGCCaCCgggCGGGG-CCAGGGCCuCCa- -3' miRNA: 3'- -CGGcGGga-GCCCCgGGUCCCGG-GGau -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 19286 | 0.66 | 0.350512 |
Target: 5'- gGCCaCCgggCGGGG-CCAGGGCCuCCa- -3' miRNA: 3'- -CGGcGGga-GCCCCgGGUCCCGG-GGau -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 22364 | 0.66 | 0.350512 |
Target: 5'- gGCCaCCgggCGGGG-CCAGGGCCuCCa- -3' miRNA: 3'- -CGGcGGga-GCCCCgGGUCCCGG-GGau -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 25441 | 0.66 | 0.350512 |
Target: 5'- gGCCaCCgggCGGGG-CCAGGGCCuCCa- -3' miRNA: 3'- -CGGcGGga-GCCCCgGGUCCCGG-GGau -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 28519 | 0.66 | 0.350512 |
Target: 5'- gGCCaCCgggCGGGG-CCAGGGCCuCCa- -3' miRNA: 3'- -CGGcGGga-GCCCCgGGUCCCGG-GGau -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 169253 | 0.66 | 0.35773 |
Target: 5'- cGCCGCCCccCGGGaCCCcGGGCgcgcgccggccuCCCg- -3' miRNA: 3'- -CGGCGGGa-GCCCcGGGuCCCG------------GGGau -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 168321 | 0.66 | 0.35773 |
Target: 5'- cGCCGCCCccCGGGaCCCcGGGCgcgcgccggccuCCCg- -3' miRNA: 3'- -CGGCGGGa-GCCCcGGGuCCCG------------GGGau -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 167389 | 0.66 | 0.35773 |
Target: 5'- cGCCGCCCccCGGGaCCCcGGGCgcgcgccggccuCCCg- -3' miRNA: 3'- -CGGCGGGa-GCCCcGGGuCCCG------------GGGau -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 69821 | 0.66 | 0.372475 |
Target: 5'- aGCCGCCCccaguacccCGGGGaCguGGGCCUg-- -3' miRNA: 3'- -CGGCGGGa--------GCCCCgGguCCCGGGgau -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 46629 | 0.66 | 0.365789 |
Target: 5'- cGCCGCCUUCcugGGGGCCCccucguucuacgcgGGacucggccuggucucGGCCCUg- -3' miRNA: 3'- -CGGCGGGAG---CCCCGGG--------------UC---------------CCGGGGau -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 99234 | 0.66 | 0.365051 |
Target: 5'- cCCGCC----GGGCCCuggGGGGCCUCUAc -3' miRNA: 3'- cGGCGGgagcCCCGGG---UCCCGGGGAU- -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 104389 | 0.66 | 0.365051 |
Target: 5'- uGCgGCCCcgUgGGGGCgCAGacGGCCCUg- -3' miRNA: 3'- -CGgCGGG--AgCCCCGgGUC--CCGGGGau -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 54908 | 0.66 | 0.365051 |
Target: 5'- gGCCGCCCUgacCcGGGCCCGccGuCCCCUc -3' miRNA: 3'- -CGGCGGGA---GcCCCGGGUccC-GGGGAu -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 89983 | 0.66 | 0.365051 |
Target: 5'- cUCGUCCUCGuccacGGCCauGGGCCCCUc -3' miRNA: 3'- cGGCGGGAGCc----CCGGguCCCGGGGAu -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 30407 | 0.66 | 0.35773 |
Target: 5'- gGCCaGCCCggcGGGCgCAGcGGCCCuCUGc -3' miRNA: 3'- -CGG-CGGGagcCCCGgGUC-CCGGG-GAU- -5' |
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28984 | 5' | -69.1 | NC_006146.1 | + | 128463 | 0.66 | 0.35773 |
Target: 5'- gGCCGCCgC-CGuGGGCCUcacguaguGGGCCCa-- -3' miRNA: 3'- -CGGCGG-GaGC-CCCGGGu-------CCCGGGgau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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