miRNA display CGI


Results 1 - 20 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28985 3' -60.6 NC_006146.1 + 28412 0.66 0.755571
Target:  5'- uCGGGUccGGCCgCCGGAGGgcucuaacCCGucucuGUCCa -3'
miRNA:   3'- -GCCCA--CCGG-GGUCUCC--------GGUuu---CAGGa -5'
28985 3' -60.6 NC_006146.1 + 39733 0.66 0.755571
Target:  5'- aCGGG-GGCCUCGGAGugauugaCCAGgguGUCCa -3'
miRNA:   3'- -GCCCaCCGGGGUCUCc------GGUUu--CAGGa -5'
28985 3' -60.6 NC_006146.1 + 164480 0.66 0.755571
Target:  5'- aGGGcccacaUGGCCCU--GGGCCAAAGggaCCc -3'
miRNA:   3'- gCCC------ACCGGGGucUCCGGUUUCa--GGa -5'
28985 3' -60.6 NC_006146.1 + 29289 0.66 0.755571
Target:  5'- -uGGUGGaCCCgAGAGGCCGAAa---- -3'
miRNA:   3'- gcCCACC-GGGgUCUCCGGUUUcagga -5'
28985 3' -60.6 NC_006146.1 + 28510 0.66 0.755571
Target:  5'- gCGGGgccagGGCCuCCAGAGGCaCcAGGcUCa- -3'
miRNA:   3'- -GCCCa----CCGG-GGUCUCCG-GuUUC-AGga -5'
28985 3' -60.6 NC_006146.1 + 26211 0.66 0.755571
Target:  5'- -uGGUGGaCCCgAGAGGCCGAAa---- -3'
miRNA:   3'- gcCCACC-GGGgUCUCCGGUUUcagga -5'
28985 3' -60.6 NC_006146.1 + 25432 0.66 0.755571
Target:  5'- gCGGGgccagGGCCuCCAGAGGCaCcAGGcUCa- -3'
miRNA:   3'- -GCCCa----CCGG-GGUCUCCG-GuUUC-AGga -5'
28985 3' -60.6 NC_006146.1 + 23133 0.66 0.755571
Target:  5'- -uGGUGGaCCCgAGAGGCCGAAa---- -3'
miRNA:   3'- gcCCACC-GGGgUCUCCGGUUUcagga -5'
28985 3' -60.6 NC_006146.1 + 22355 0.66 0.755571
Target:  5'- gCGGGgccagGGCCuCCAGAGGCaCcAGGcUCa- -3'
miRNA:   3'- -GCCCa----CCGG-GGUCUCCG-GuUUC-AGga -5'
28985 3' -60.6 NC_006146.1 + 20055 0.66 0.755571
Target:  5'- -uGGUGGaCCCgAGAGGCCGAAa---- -3'
miRNA:   3'- gcCCACC-GGGgUCUCCGGUUUcagga -5'
28985 3' -60.6 NC_006146.1 + 19277 0.66 0.755571
Target:  5'- gCGGGgccagGGCCuCCAGAGGCaCcAGGcUCa- -3'
miRNA:   3'- -GCCCa----CCGG-GGUCUCCG-GuUUC-AGga -5'
28985 3' -60.6 NC_006146.1 + 16977 0.66 0.755571
Target:  5'- -uGGUGGaCCCgAGAGGCCGAAa---- -3'
miRNA:   3'- gcCCACC-GGGgUCUCCGGUUUcagga -5'
28985 3' -60.6 NC_006146.1 + 16199 0.66 0.755571
Target:  5'- gCGGGgccagGGCCuCCAGAGGCaCcAGGcUCa- -3'
miRNA:   3'- -GCCCa----CCGG-GGUCUCCG-GuUUC-AGga -5'
28985 3' -60.6 NC_006146.1 + 13899 0.66 0.755571
Target:  5'- -uGGUGGaCCCgAGAGGCCGAAa---- -3'
miRNA:   3'- gcCCACC-GGGgUCUCCGGUUUcagga -5'
28985 3' -60.6 NC_006146.1 + 13121 0.66 0.755571
Target:  5'- gCGGGgccagGGCCuCCAGAGGCaCcAGGcUCa- -3'
miRNA:   3'- -GCCCa----CCGG-GGUCUCCG-GuUUC-AGga -5'
28985 3' -60.6 NC_006146.1 + 9347 0.66 0.755571
Target:  5'- gGGGUGGCggCuGAGGuCCGAGGgggcgCCUg -3'
miRNA:   3'- gCCCACCGggGuCUCC-GGUUUCa----GGA- -5'
28985 3' -60.6 NC_006146.1 + 13365 0.66 0.753716
Target:  5'- aGGGgagccgcccucgGGgCCCAG-GGCCccuAGUCCa -3'
miRNA:   3'- gCCCa-----------CCgGGGUCuCCGGuu-UCAGGa -5'
28985 3' -60.6 NC_006146.1 + 28755 0.66 0.753716
Target:  5'- aGGGgagccgcccucgGGgCCCAG-GGCCccuAGUCCa -3'
miRNA:   3'- gCCCa-----------CCgGGGUCuCCGGuu-UCAGGa -5'
28985 3' -60.6 NC_006146.1 + 22599 0.66 0.753716
Target:  5'- aGGGgagccgcccucgGGgCCCAG-GGCCccuAGUCCa -3'
miRNA:   3'- gCCCa-----------CCgGGGUCuCCGGuu-UCAGGa -5'
28985 3' -60.6 NC_006146.1 + 25677 0.66 0.753716
Target:  5'- aGGGgagccgcccucgGGgCCCAG-GGCCccuAGUCCa -3'
miRNA:   3'- gCCCa-----------CCgGGGUCuCCGGuu-UCAGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.