miRNA display CGI


Results 1 - 20 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28985 3' -60.6 NC_006146.1 + 22701 1.07 0.001687
Target:  5'- cCGGGUGGCCCCAGAGGCCAAAGUCCUc -3'
miRNA:   3'- -GCCCACCGGGGUCUCCGGUUUCAGGA- -5'
28985 3' -60.6 NC_006146.1 + 25779 1.07 0.001687
Target:  5'- cCGGGUGGCCCCAGAGGCCAAAGUCCUc -3'
miRNA:   3'- -GCCCACCGGGGUCUCCGGUUUCAGGA- -5'
28985 3' -60.6 NC_006146.1 + 19623 1.07 0.001687
Target:  5'- cCGGGUGGCCCCAGAGGCCAAAGUCCUc -3'
miRNA:   3'- -GCCCACCGGGGUCUCCGGUUUCAGGA- -5'
28985 3' -60.6 NC_006146.1 + 28857 1.07 0.001687
Target:  5'- cCGGGUGGCCCCAGAGGCCAAAGUCCUc -3'
miRNA:   3'- -GCCCACCGGGGUCUCCGGUUUCAGGA- -5'
28985 3' -60.6 NC_006146.1 + 16545 1.07 0.001687
Target:  5'- cCGGGUGGCCCCAGAGGCCAAAGUCCUc -3'
miRNA:   3'- -GCCCACCGGGGUCUCCGGUUUCAGGA- -5'
28985 3' -60.6 NC_006146.1 + 13467 1.07 0.001687
Target:  5'- cCGGGUGGCCCCAGAGGCCAAAGUCCUc -3'
miRNA:   3'- -GCCCACCGGGGUCUCCGGUUUCAGGA- -5'
28985 3' -60.6 NC_006146.1 + 155798 0.8 0.133316
Target:  5'- -cGGUGGCCCUGGGGGCCAccGAGUCa- -3'
miRNA:   3'- gcCCACCGGGGUCUCCGGU--UUCAGga -5'
28985 3' -60.6 NC_006146.1 + 119516 0.75 0.274386
Target:  5'- cCGGGaggGGCCCgGGGGaGCCAGAGgggCCa -3'
miRNA:   3'- -GCCCa--CCGGGgUCUC-CGGUUUCa--GGa -5'
28985 3' -60.6 NC_006146.1 + 170197 0.73 0.357875
Target:  5'- gCGGGgccggGGCCUggCGGGGGCCAGcgcggGGUCCc -3'
miRNA:   3'- -GCCCa----CCGGG--GUCUCCGGUU-----UCAGGa -5'
28985 3' -60.6 NC_006146.1 + 169266 0.73 0.357875
Target:  5'- gCGGGgccggGGCCUggCGGGGGCCAGcgcggGGUCCc -3'
miRNA:   3'- -GCCCa----CCGGG--GUCUCCGGUU-----UCAGGa -5'
28985 3' -60.6 NC_006146.1 + 167402 0.73 0.357875
Target:  5'- gCGGGgccggGGCCUggCGGGGGCCAGcgcggGGUCCc -3'
miRNA:   3'- -GCCCa----CCGGG--GUCUCCGGUU-----UCAGGa -5'
28985 3' -60.6 NC_006146.1 + 168334 0.73 0.357875
Target:  5'- gCGGGgccggGGCCUggCGGGGGCCAGcgcggGGUCCc -3'
miRNA:   3'- -GCCCa----CCGGG--GUCUCCGGUU-----UCAGGa -5'
28985 3' -60.6 NC_006146.1 + 168542 0.72 0.373411
Target:  5'- uGGG-GGCCUCGGGGGCgGAggggggGGUCCc -3'
miRNA:   3'- gCCCaCCGGGGUCUCCGgUU------UCAGGa -5'
28985 3' -60.6 NC_006146.1 + 170405 0.72 0.373411
Target:  5'- uGGG-GGCCUCGGGGGCgGAggggggGGUCCc -3'
miRNA:   3'- gCCCaCCGGGGUCUCCGgUU------UCAGGa -5'
28985 3' -60.6 NC_006146.1 + 169474 0.72 0.373411
Target:  5'- uGGG-GGCCUCGGGGGCgGAggggggGGUCCc -3'
miRNA:   3'- gCCCaCCGGGGUCUCCGgUU------UCAGGa -5'
28985 3' -60.6 NC_006146.1 + 167610 0.72 0.373411
Target:  5'- uGGG-GGCCUCGGGGGCgGAggggggGGUCCc -3'
miRNA:   3'- gCCCaCCGGGGUCUCCGgUU------UCAGGa -5'
28985 3' -60.6 NC_006146.1 + 38969 0.72 0.378955
Target:  5'- cCGGGUgGGCCCCcagacucucgcagaGGGGGCagauGGUCCg -3'
miRNA:   3'- -GCCCA-CCGGGG--------------UCUCCGguu-UCAGGa -5'
28985 3' -60.6 NC_006146.1 + 155683 0.72 0.38055
Target:  5'- -aGGUGGCCUCAGAGGggcuggcCCGGcugcAGUCCUg -3'
miRNA:   3'- gcCCACCGGGGUCUCC-------GGUU----UCAGGA- -5'
28985 3' -60.6 NC_006146.1 + 109173 0.72 0.381348
Target:  5'- gCGGGccaucaggGGCUCCAG-GGCCcuGGUCCa -3'
miRNA:   3'- -GCCCa-------CCGGGGUCuCCGGuuUCAGGa -5'
28985 3' -60.6 NC_006146.1 + 43536 0.72 0.389398
Target:  5'- aCGGGcugcgccugcUGGCCCUGGGcGGCCGAGG-CCg -3'
miRNA:   3'- -GCCC----------ACCGGGGUCU-CCGGUUUCaGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.