miRNA display CGI


Results 1 - 20 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28985 5' -55.3 NC_006146.1 + 19409 0.66 0.956474
Target:  5'- -gAGGGCggcgccUUGGGGCCCGGA--GUCUc -3'
miRNA:   3'- ggUCCCGa-----AGUCUCGGGUCUugCAGG- -5'
28985 5' -55.3 NC_006146.1 + 56198 0.66 0.956474
Target:  5'- gCCAGGGCccgggUCucgcggacGAGCCgC-GAGcCGUCCa -3'
miRNA:   3'- -GGUCCCGa----AGu-------CUCGG-GuCUU-GCAGG- -5'
28985 5' -55.3 NC_006146.1 + 44516 0.66 0.956474
Target:  5'- uCCGGGGUUUCAG-GCUgAcGGGCGg-- -3'
miRNA:   3'- -GGUCCCGAAGUCuCGGgU-CUUGCagg -5'
28985 5' -55.3 NC_006146.1 + 147111 0.66 0.956474
Target:  5'- gCUGGGGCUcagCGGGcCCCAGAcGCGcaggCCg -3'
miRNA:   3'- -GGUCCCGAa--GUCUcGGGUCU-UGCa---GG- -5'
28985 5' -55.3 NC_006146.1 + 56330 0.66 0.956097
Target:  5'- -gAGGGCUcucggucUCGGGGCCC---GCGgCCa -3'
miRNA:   3'- ggUCCCGA-------AGUCUCGGGucuUGCaGG- -5'
28985 5' -55.3 NC_006146.1 + 120363 0.66 0.956097
Target:  5'- gCgGGGGCgaCGGGGCgUCGGGAagggggcCGUCCu -3'
miRNA:   3'- -GgUCCCGaaGUCUCG-GGUCUU-------GCAGG- -5'
28985 5' -55.3 NC_006146.1 + 51829 0.66 0.956097
Target:  5'- cCCGGGGCggCguggaggGGGGCUCGGGGCcuggCCc -3'
miRNA:   3'- -GGUCCCGaaG-------UCUCGGGUCUUGca--GG- -5'
28985 5' -55.3 NC_006146.1 + 52117 0.66 0.952606
Target:  5'- aCCGGGGCcgcccgUCGGuGCCUcGGAgGcCCc -3'
miRNA:   3'- -GGUCCCGa-----AGUCuCGGGuCUUgCaGG- -5'
28985 5' -55.3 NC_006146.1 + 95096 0.66 0.952606
Target:  5'- gCAGGGCcucgaaggCGGcGCCCGaGACGcCCg -3'
miRNA:   3'- gGUCCCGaa------GUCuCGGGUcUUGCaGG- -5'
28985 5' -55.3 NC_006146.1 + 47649 0.66 0.952606
Target:  5'- uCCuGGaGCUcgagagCAuGGCCCAGAAC-UCCa -3'
miRNA:   3'- -GGuCC-CGAa-----GUcUCGGGUCUUGcAGG- -5'
28985 5' -55.3 NC_006146.1 + 46342 0.66 0.952606
Target:  5'- cCUGGGGCUgguccacaaUCAGAGCacggCCAGGGC--CCg -3'
miRNA:   3'- -GGUCCCGA---------AGUCUCG----GGUCUUGcaGG- -5'
28985 5' -55.3 NC_006146.1 + 30144 0.66 0.952606
Target:  5'- uUguGGGUuugUUCuuuGCCUAGAGCGUgCCa -3'
miRNA:   3'- -GguCCCG---AAGucuCGGGUCUUGCA-GG- -5'
28985 5' -55.3 NC_006146.1 + 147713 0.66 0.952606
Target:  5'- gCCAGGaagGCggCGGGGCCUGGGuaauaGCGggCCg -3'
miRNA:   3'- -GGUCC---CGaaGUCUCGGGUCU-----UGCa-GG- -5'
28985 5' -55.3 NC_006146.1 + 49034 0.66 0.948514
Target:  5'- uCCGGGGCgc---GGCCCgAGAcCGUCg -3'
miRNA:   3'- -GGUCCCGaagucUCGGG-UCUuGCAGg -5'
28985 5' -55.3 NC_006146.1 + 128519 0.66 0.948514
Target:  5'- uCCAGGGCcagCAGgaccAGCCCGGGAaagagagagcUGaCCg -3'
miRNA:   3'- -GGUCCCGaa-GUC----UCGGGUCUU----------GCaGG- -5'
28985 5' -55.3 NC_006146.1 + 157970 0.66 0.948514
Target:  5'- aCgGGGGCUcCcGGGCCCAcGAggagagcaACGUCa -3'
miRNA:   3'- -GgUCCCGAaGuCUCGGGU-CU--------UGCAGg -5'
28985 5' -55.3 NC_006146.1 + 100899 0.66 0.948514
Target:  5'- aCuGGGUcaggUUCAGGGCCCcaua-GUCCa -3'
miRNA:   3'- gGuCCCG----AAGUCUCGGGucuugCAGG- -5'
28985 5' -55.3 NC_006146.1 + 57021 0.66 0.948514
Target:  5'- gCCAGaGGCcgccUCGGGGgCCAGAAgcccCGcCCg -3'
miRNA:   3'- -GGUC-CCGa---AGUCUCgGGUCUU----GCaGG- -5'
28985 5' -55.3 NC_006146.1 + 53647 0.66 0.948514
Target:  5'- gCGGGGCUcagUCAGcGCCCGacaGACGcUCUu -3'
miRNA:   3'- gGUCCCGA---AGUCuCGGGUc--UUGC-AGG- -5'
28985 5' -55.3 NC_006146.1 + 108500 0.66 0.948092
Target:  5'- cCCGGGGUUcCGGAGucgauaaccuuacCCCAGGccgaggcccCGUCCu -3'
miRNA:   3'- -GGUCCCGAaGUCUC-------------GGGUCUu--------GCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.