miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28986 3' -59.8 NC_006146.1 + 107537 0.66 0.786397
Target:  5'- aACaUgAGCCCCaGgaggGcCCugUGCCCAGu -3'
miRNA:   3'- gUG-AgUCGGGG-Ca---CaGGugACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 149460 0.66 0.784609
Target:  5'- gGCUCAGCUCCGUGgagaagcagagcUCCcccauggggaccCUGCCCu- -3'
miRNA:   3'- gUGAGUCGGGGCAC------------AGGu-----------GACGGGuc -5'
28986 3' -59.8 NC_006146.1 + 111427 0.66 0.777406
Target:  5'- gACUCAGCCgUGg--CCAUUGCCUc- -3'
miRNA:   3'- gUGAGUCGGgGCacaGGUGACGGGuc -5'
28986 3' -59.8 NC_006146.1 + 33313 0.66 0.768291
Target:  5'- cCGCUCGGUCCUGggGcUCCGggGUCCGGg -3'
miRNA:   3'- -GUGAGUCGGGGCa-C-AGGUgaCGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 147044 0.66 0.768291
Target:  5'- gACgCGGCCCCGag-CCAg-GCCCGGg -3'
miRNA:   3'- gUGaGUCGGGGCacaGGUgaCGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 108390 0.66 0.767373
Target:  5'- cCACUaCAGCCgugucggCCGUGUaCA-UGCCCAGg -3'
miRNA:   3'- -GUGA-GUCGG-------GGCACAgGUgACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 76686 0.66 0.759061
Target:  5'- aACUguGuCCCCGggaccGUCUACUGCCa-- -3'
miRNA:   3'- gUGAguC-GGGGCa----CAGGUGACGGguc -5'
28986 3' -59.8 NC_006146.1 + 41598 0.66 0.759061
Target:  5'- gGCggagaGGCCCgGggggcugGUCCGCUggGCCCGGg -3'
miRNA:   3'- gUGag---UCGGGgCa------CAGGUGA--CGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 58838 0.66 0.759061
Target:  5'- aGCUCggggacaaagAGCCCCGUGaaga-UGCCCGGg -3'
miRNA:   3'- gUGAG----------UCGGGGCACaggugACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 42051 0.66 0.749725
Target:  5'- uCACgaGGCCCCGguagccccUGgCCACgGCCCGGg -3'
miRNA:   3'- -GUGagUCGGGGC--------ACaGGUGaCGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 40933 0.66 0.740291
Target:  5'- gGC-CAGCCCCaagcacggGcCCGcCUGCCCGGa -3'
miRNA:   3'- gUGaGUCGGGGca------CaGGU-GACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 27397 0.67 0.730767
Target:  5'- cCGCUCAGCCCaccacUCCACcacaCCCAGg -3'
miRNA:   3'- -GUGAGUCGGGgcac-AGGUGac--GGGUC- -5'
28986 3' -59.8 NC_006146.1 + 24319 0.67 0.730767
Target:  5'- cCGCUCAGCCCaccacUCCACcacaCCCAGg -3'
miRNA:   3'- -GUGAGUCGGGgcac-AGGUGac--GGGUC- -5'
28986 3' -59.8 NC_006146.1 + 18163 0.67 0.730767
Target:  5'- cCGCUCAGCCCaccacUCCACcacaCCCAGg -3'
miRNA:   3'- -GUGAGUCGGGgcac-AGGUGac--GGGUC- -5'
28986 3' -59.8 NC_006146.1 + 21241 0.67 0.730767
Target:  5'- cCGCUCAGCCCaccacUCCACcacaCCCAGg -3'
miRNA:   3'- -GUGAGUCGGGgcac-AGGUGac--GGGUC- -5'
28986 3' -59.8 NC_006146.1 + 99361 0.67 0.730767
Target:  5'- aGCgUCGGCgCCCGgg-CCGCgcguugagGCCCAGg -3'
miRNA:   3'- gUG-AGUCG-GGGCacaGGUGa-------CGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 15085 0.67 0.730767
Target:  5'- cCGCUCAGCCCaccacUCCACcacaCCCAGg -3'
miRNA:   3'- -GUGAGUCGGGgcac-AGGUGac--GGGUC- -5'
28986 3' -59.8 NC_006146.1 + 109052 0.67 0.72981
Target:  5'- -cCUCuGCCCCGggaGUCCcggcaccagccccACUGCCCc- -3'
miRNA:   3'- guGAGuCGGGGCa--CAGG-------------UGACGGGuc -5'
28986 3' -59.8 NC_006146.1 + 34258 0.67 0.721163
Target:  5'- ---cCGGCCCCGUG-CCACgggaccCCCGGc -3'
miRNA:   3'- gugaGUCGGGGCACaGGUGac----GGGUC- -5'
28986 3' -59.8 NC_006146.1 + 8617 0.67 0.701746
Target:  5'- gACUCgacGGCCCCuggGUGUCCuc-GCCCAu -3'
miRNA:   3'- gUGAG---UCGGGG---CACAGGugaCGGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.