miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28986 3' -59.8 NC_006146.1 + 24319 0.67 0.730767
Target:  5'- cCGCUCAGCCCaccacUCCACcacaCCCAGg -3'
miRNA:   3'- -GUGAGUCGGGgcac-AGGUGac--GGGUC- -5'
28986 3' -59.8 NC_006146.1 + 67906 0.67 0.682106
Target:  5'- aACUgGGCCUCGUGggagCCGaaggUGCUCAGg -3'
miRNA:   3'- gUGAgUCGGGGCACa---GGUg---ACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 34258 0.67 0.721163
Target:  5'- ---cCGGCCCCGUG-CCACgggaccCCCGGc -3'
miRNA:   3'- gugaGUCGGGGCACaGGUGac----GGGUC- -5'
28986 3' -59.8 NC_006146.1 + 58051 0.67 0.682106
Target:  5'- gACgUCGGCCUCGggGUCCACguugGCCUu- -3'
miRNA:   3'- gUG-AGUCGGGGCa-CAGGUGa---CGGGuc -5'
28986 3' -59.8 NC_006146.1 + 18163 0.67 0.730767
Target:  5'- cCGCUCAGCCCaccacUCCACcacaCCCAGg -3'
miRNA:   3'- -GUGAGUCGGGgcac-AGGUGac--GGGUC- -5'
28986 3' -59.8 NC_006146.1 + 21241 0.67 0.730767
Target:  5'- cCGCUCAGCCCaccacUCCACcacaCCCAGg -3'
miRNA:   3'- -GUGAGUCGGGgcac-AGGUGac--GGGUC- -5'
28986 3' -59.8 NC_006146.1 + 8617 0.67 0.701746
Target:  5'- gACUCgacGGCCCCuggGUGUCCuc-GCCCAu -3'
miRNA:   3'- gUGAG---UCGGGG---CACAGGugaCGGGUc -5'
28986 3' -59.8 NC_006146.1 + 109052 0.67 0.72981
Target:  5'- -cCUCuGCCCCGggaGUCCcggcaccagccccACUGCCCc- -3'
miRNA:   3'- guGAGuCGGGGCa--CAGG-------------UGACGGGuc -5'
28986 3' -59.8 NC_006146.1 + 136680 0.67 0.69195
Target:  5'- gGCcggguGCCCCuggGUCCGCUGCCCc- -3'
miRNA:   3'- gUGagu--CGGGGca-CAGGUGACGGGuc -5'
28986 3' -59.8 NC_006146.1 + 13544 0.68 0.642423
Target:  5'- ---gCAGCCCCGUccCCGCccGCCCGGc -3'
miRNA:   3'- gugaGUCGGGGCAcaGGUGa-CGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 135684 0.68 0.632464
Target:  5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGu -3'
miRNA:   3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUc -5'
28986 3' -59.8 NC_006146.1 + 49931 0.68 0.632464
Target:  5'- cCACUCGGUCCCGgacGUCCGCcguguacuUGCgCAc -3'
miRNA:   3'- -GUGAGUCGGGGCa--CAGGUG--------ACGgGUc -5'
28986 3' -59.8 NC_006146.1 + 160164 0.68 0.652375
Target:  5'- cCGCaUGGCCCCGgcugGcUCUgGCUGCCCAGa -3'
miRNA:   3'- -GUGaGUCGGGGCa---C-AGG-UGACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 25856 0.68 0.642423
Target:  5'- ---gCAGCCCCGUccCCGCccGCCCGGc -3'
miRNA:   3'- gugaGUCGGGGCAcaGGUGa-CGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 98517 0.68 0.662311
Target:  5'- gCGCcCGGCCCCGUG-CCAgacgGCCaCGGa -3'
miRNA:   3'- -GUGaGUCGGGGCACaGGUga--CGG-GUC- -5'
28986 3' -59.8 NC_006146.1 + 48278 0.68 0.636448
Target:  5'- gCugUCGGCCgCCGUGagcgaguacguggaCCgcacGCUGCCCGGg -3'
miRNA:   3'- -GugAGUCGG-GGCACa-------------GG----UGACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 125378 0.68 0.622505
Target:  5'- gUugUCAGCCUCGguUGUCUuuccucugauGCUGCuCCGGg -3'
miRNA:   3'- -GugAGUCGGGGC--ACAGG----------UGACG-GGUC- -5'
28986 3' -59.8 NC_006146.1 + 108442 0.68 0.662311
Target:  5'- gACgCAGUgCCCGUccguaccaagGUCCACUaGCCCGGa -3'
miRNA:   3'- gUGaGUCG-GGGCA----------CAGGUGA-CGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 22778 0.68 0.642423
Target:  5'- ---gCAGCCCCGUccCCGCccGCCCGGc -3'
miRNA:   3'- gugaGUCGGGGCAcaGGUGa-CGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 19700 0.68 0.642423
Target:  5'- ---gCAGCCCCGUccCCGCccGCCCGGc -3'
miRNA:   3'- gugaGUCGGGGCAcaGGUGa-CGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.