Results 1 - 20 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28986 | 3' | -59.8 | NC_006146.1 | + | 26599 | 1.07 | 0.001772 |
Target: 5'- cCACUCAGCCCCGUGUCCACUGCCCAGu -3' miRNA: 3'- -GUGAGUCGGGGCACAGGUGACGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 20443 | 1.07 | 0.001772 |
Target: 5'- cCACUCAGCCCCGUGUCCACUGCCCAGu -3' miRNA: 3'- -GUGAGUCGGGGCACAGGUGACGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 17365 | 1.07 | 0.001772 |
Target: 5'- cCACUCAGCCCCGUGUCCACUGCCCAGu -3' miRNA: 3'- -GUGAGUCGGGGCACAGGUGACGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 14287 | 1.07 | 0.001772 |
Target: 5'- cCACUCAGCCCCGUGUCCACUGCCCAGu -3' miRNA: 3'- -GUGAGUCGGGGCACAGGUGACGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 23521 | 1.07 | 0.001772 |
Target: 5'- cCACUCAGCCCCGUGUCCACUGCCCAGu -3' miRNA: 3'- -GUGAGUCGGGGCACAGGUGACGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 29677 | 1.07 | 0.001772 |
Target: 5'- cCACUCAGCCCCGUGUCCACUGCCCAGu -3' miRNA: 3'- -GUGAGUCGGGGCACAGGUGACGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 136723 | 0.75 | 0.287437 |
Target: 5'- gGC-CGGCCgcugCCGgGUCCGCUGCCCGGu -3' miRNA: 3'- gUGaGUCGG----GGCaCAGGUGACGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 98069 | 0.74 | 0.321598 |
Target: 5'- gGCUCAgGCCCuCGU-UCCACgGCCCGGg -3' miRNA: 3'- gUGAGU-CGGG-GCAcAGGUGaCGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 135405 | 0.72 | 0.44145 |
Target: 5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3' miRNA: 3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 135219 | 0.72 | 0.44145 |
Target: 5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3' miRNA: 3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 136334 | 0.72 | 0.44145 |
Target: 5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3' miRNA: 3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 136241 | 0.72 | 0.44145 |
Target: 5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3' miRNA: 3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 136148 | 0.72 | 0.44145 |
Target: 5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3' miRNA: 3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 136055 | 0.72 | 0.44145 |
Target: 5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3' miRNA: 3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 135312 | 0.72 | 0.44145 |
Target: 5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3' miRNA: 3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 135869 | 0.72 | 0.44145 |
Target: 5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3' miRNA: 3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 135776 | 0.72 | 0.44145 |
Target: 5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3' miRNA: 3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 135591 | 0.72 | 0.44145 |
Target: 5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3' miRNA: 3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 135498 | 0.72 | 0.44145 |
Target: 5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3' miRNA: 3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 135962 | 0.72 | 0.44145 |
Target: 5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3' miRNA: 3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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