miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28986 3' -59.8 NC_006146.1 + 136055 0.72 0.44145
Target:  5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3'
miRNA:   3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 135962 0.72 0.44145
Target:  5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3'
miRNA:   3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 135869 0.72 0.44145
Target:  5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3'
miRNA:   3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 136891 0.72 0.44145
Target:  5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3'
miRNA:   3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 135312 0.72 0.44145
Target:  5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3'
miRNA:   3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 137077 0.72 0.44145
Target:  5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3'
miRNA:   3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 137170 0.72 0.44145
Target:  5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3'
miRNA:   3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 137263 0.72 0.44145
Target:  5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3'
miRNA:   3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 137356 0.72 0.44145
Target:  5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3'
miRNA:   3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 137449 0.72 0.44145
Target:  5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3'
miRNA:   3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 137542 0.72 0.44145
Target:  5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3'
miRNA:   3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 136984 0.72 0.44145
Target:  5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3'
miRNA:   3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 67726 0.71 0.486674
Target:  5'- gGCaaaGGCCUCG-GUCCGCUccGCCCAGa -3'
miRNA:   3'- gUGag-UCGGGGCaCAGGUGA--CGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 128162 0.71 0.486674
Target:  5'- aCACUaGGUCCCG-GUCC-CUGCCCu- -3'
miRNA:   3'- -GUGAgUCGGGGCaCAGGuGACGGGuc -5'
28986 3' -59.8 NC_006146.1 + 148705 0.71 0.486674
Target:  5'- uGCUCuccacccuGGCCCCGggGUCCACcguggUGaCCCAGg -3'
miRNA:   3'- gUGAG--------UCGGGGCa-CAGGUG-----AC-GGGUC- -5'
28986 3' -59.8 NC_006146.1 + 135127 0.7 0.514837
Target:  5'- uGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3'
miRNA:   3'- gUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 92745 0.7 0.524373
Target:  5'- -uCUgAGaCCCCaggGUGUagCCGCUGCCCAGg -3'
miRNA:   3'- guGAgUC-GGGG---CACA--GGUGACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 109301 0.7 0.533975
Target:  5'- -uCUCGGCCCCGgccgcggCCGCUGCagCCGGc -3'
miRNA:   3'- guGAGUCGGGGCaca----GGUGACG--GGUC- -5'
28986 3' -59.8 NC_006146.1 + 71397 0.7 0.543639
Target:  5'- aCGCUaCGGCCCCGcUGgacuUCUACUGgCCCAc -3'
miRNA:   3'- -GUGA-GUCGGGGC-AC----AGGUGAC-GGGUc -5'
28986 3' -59.8 NC_006146.1 + 128468 0.69 0.582805
Target:  5'- gGCUCGGCCgccgCCGUGggccUCACguaguggGCCCAGa -3'
miRNA:   3'- gUGAGUCGG----GGCACa---GGUGa------CGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.