miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28986 3' -59.8 NC_006146.1 + 136680 0.67 0.69195
Target:  5'- gGCcggguGCCCCuggGUCCGCUGCCCc- -3'
miRNA:   3'- gUGagu--CGGGGca-CAGGUGACGGGuc -5'
28986 3' -59.8 NC_006146.1 + 20169 0.67 0.682106
Target:  5'- cCACUC-GCCCCGaGUCCA--GCCCc- -3'
miRNA:   3'- -GUGAGuCGGGGCaCAGGUgaCGGGuc -5'
28986 3' -59.8 NC_006146.1 + 29403 0.67 0.682106
Target:  5'- cCACUC-GCCCCGaGUCCA--GCCCc- -3'
miRNA:   3'- -GUGAGuCGGGGCaCAGGUgaCGGGuc -5'
28986 3' -59.8 NC_006146.1 + 23247 0.67 0.682106
Target:  5'- cCACUC-GCCCCGaGUCCA--GCCCc- -3'
miRNA:   3'- -GUGAGuCGGGGCaCAGGUgaCGGGuc -5'
28986 3' -59.8 NC_006146.1 + 26325 0.67 0.682106
Target:  5'- cCACUC-GCCCCGaGUCCA--GCCCc- -3'
miRNA:   3'- -GUGAGuCGGGGCaCAGGUgaCGGGuc -5'
28986 3' -59.8 NC_006146.1 + 14013 0.67 0.682106
Target:  5'- cCACUC-GCCCCGaGUCCA--GCCCc- -3'
miRNA:   3'- -GUGAGuCGGGGCaCAGGUgaCGGGuc -5'
28986 3' -59.8 NC_006146.1 + 17091 0.67 0.682106
Target:  5'- cCACUC-GCCCCGaGUCCA--GCCCc- -3'
miRNA:   3'- -GUGAGuCGGGGCaCAGGUgaCGGGuc -5'
28986 3' -59.8 NC_006146.1 + 67906 0.67 0.682106
Target:  5'- aACUgGGCCUCGUGggagCCGaaggUGCUCAGg -3'
miRNA:   3'- gUGAgUCGGGGCACa---GGUg---ACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 58051 0.67 0.682106
Target:  5'- gACgUCGGCCUCGggGUCCACguugGCCUu- -3'
miRNA:   3'- gUG-AGUCGGGGCa-CAGGUGa---CGGGuc -5'
28986 3' -59.8 NC_006146.1 + 108442 0.68 0.662311
Target:  5'- gACgCAGUgCCCGUccguaccaagGUCCACUaGCCCGGa -3'
miRNA:   3'- gUGaGUCG-GGGCA----------CAGGUGA-CGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 98517 0.68 0.662311
Target:  5'- gCGCcCGGCCCCGUG-CCAgacgGCCaCGGa -3'
miRNA:   3'- -GUGaGUCGGGGCACaGGUga--CGG-GUC- -5'
28986 3' -59.8 NC_006146.1 + 160164 0.68 0.652375
Target:  5'- cCGCaUGGCCCCGgcugGcUCUgGCUGCCCAGa -3'
miRNA:   3'- -GUGaGUCGGGGCa---C-AGG-UGACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 67429 0.68 0.652375
Target:  5'- ---cCAGCCuCCGUGgcuUCCugUGCCUGGc -3'
miRNA:   3'- gugaGUCGG-GGCAC---AGGugACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 22778 0.68 0.642423
Target:  5'- ---gCAGCCCCGUccCCGCccGCCCGGc -3'
miRNA:   3'- gugaGUCGGGGCAcaGGUGa-CGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 13544 0.68 0.642423
Target:  5'- ---gCAGCCCCGUccCCGCccGCCCGGc -3'
miRNA:   3'- gugaGUCGGGGCAcaGGUGa-CGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 16622 0.68 0.642423
Target:  5'- ---gCAGCCCCGUccCCGCccGCCCGGc -3'
miRNA:   3'- gugaGUCGGGGCAcaGGUGa-CGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 19700 0.68 0.642423
Target:  5'- ---gCAGCCCCGUccCCGCccGCCCGGc -3'
miRNA:   3'- gugaGUCGGGGCAcaGGUGa-CGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 25856 0.68 0.642423
Target:  5'- ---gCAGCCCCGUccCCGCccGCCCGGc -3'
miRNA:   3'- gugaGUCGGGGCAcaGGUGa-CGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 48278 0.68 0.636448
Target:  5'- gCugUCGGCCgCCGUGagcgaguacguggaCCgcacGCUGCCCGGg -3'
miRNA:   3'- -GugAGUCGG-GGCACa-------------GG----UGACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 49931 0.68 0.632464
Target:  5'- cCACUCGGUCCCGgacGUCCGCcguguacuUGCgCAc -3'
miRNA:   3'- -GUGAGUCGGGGCa--CAGGUG--------ACGgGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.