Results 41 - 60 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28986 | 3' | -59.8 | NC_006146.1 | + | 135684 | 0.68 | 0.632464 |
Target: 5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGu -3' miRNA: 3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUc -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 141316 | 0.68 | 0.622505 |
Target: 5'- gGCUgAGCCCCcgggGUCCugU-CCCAGc -3' miRNA: 3'- gUGAgUCGGGGca--CAGGugAcGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 93989 | 0.68 | 0.622505 |
Target: 5'- gGCUgCAGCCCCGcgGUcaccucuggcucCCACgugcgGCCCGGc -3' miRNA: 3'- gUGA-GUCGGGGCa-CA------------GGUGa----CGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 125378 | 0.68 | 0.622505 |
Target: 5'- gUugUCAGCCUCGguUGUCUuuccucugauGCUGCuCCGGg -3' miRNA: 3'- -GugAGUCGGGGC--ACAGG----------UGACG-GGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 151760 | 0.69 | 0.612552 |
Target: 5'- aCGCU-GGCCCCGUcagCCuugcgcCUGCCCAGu -3' miRNA: 3'- -GUGAgUCGGGGCAca-GGu-----GACGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 67302 | 0.69 | 0.602614 |
Target: 5'- cCGC-CAGCuCCCGggccacGUCCGCgcugagcccgGCCCAGg -3' miRNA: 3'- -GUGaGUCG-GGGCa-----CAGGUGa---------CGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 160085 | 0.69 | 0.602614 |
Target: 5'- -cCUguGgCCCGUGUagCCGgUGCCCAGc -3' miRNA: 3'- guGAguCgGGGCACA--GGUgACGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 143525 | 0.69 | 0.592696 |
Target: 5'- -uCUguGCCCCGguugCUGCUGUCCAGa -3' miRNA: 3'- guGAguCGGGGCaca-GGUGACGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 128468 | 0.69 | 0.582805 |
Target: 5'- gGCUCGGCCgccgCCGUGggccUCACguaguggGCCCAGa -3' miRNA: 3'- gUGAGUCGG----GGCACa---GGUGa------CGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 71397 | 0.7 | 0.543639 |
Target: 5'- aCGCUaCGGCCCCGcUGgacuUCUACUGgCCCAc -3' miRNA: 3'- -GUGA-GUCGGGGC-AC----AGGUGAC-GGGUc -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 109301 | 0.7 | 0.533975 |
Target: 5'- -uCUCGGCCCCGgccgcggCCGCUGCagCCGGc -3' miRNA: 3'- guGAGUCGGGGCaca----GGUGACG--GGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 92745 | 0.7 | 0.524373 |
Target: 5'- -uCUgAGaCCCCaggGUGUagCCGCUGCCCAGg -3' miRNA: 3'- guGAgUC-GGGG---CACA--GGUGACGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 135127 | 0.7 | 0.514837 |
Target: 5'- uGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3' miRNA: 3'- gUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 67726 | 0.71 | 0.486674 |
Target: 5'- gGCaaaGGCCUCG-GUCCGCUccGCCCAGa -3' miRNA: 3'- gUGag-UCGGGGCaCAGGUGA--CGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 128162 | 0.71 | 0.486674 |
Target: 5'- aCACUaGGUCCCG-GUCC-CUGCCCu- -3' miRNA: 3'- -GUGAgUCGGGGCaCAGGuGACGGGuc -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 148705 | 0.71 | 0.486674 |
Target: 5'- uGCUCuccacccuGGCCCCGggGUCCACcguggUGaCCCAGg -3' miRNA: 3'- gUGAG--------UCGGGGCa-CAGGUG-----AC-GGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 135869 | 0.72 | 0.44145 |
Target: 5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3' miRNA: 3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 135405 | 0.72 | 0.44145 |
Target: 5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3' miRNA: 3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 135498 | 0.72 | 0.44145 |
Target: 5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3' miRNA: 3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 135591 | 0.72 | 0.44145 |
Target: 5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3' miRNA: 3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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