miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28986 3' -59.8 NC_006146.1 + 8617 0.67 0.701746
Target:  5'- gACUCgacGGCCCCuggGUGUCCuc-GCCCAu -3'
miRNA:   3'- gUGAG---UCGGGG---CACAGGugaCGGGUc -5'
28986 3' -59.8 NC_006146.1 + 13544 0.68 0.642423
Target:  5'- ---gCAGCCCCGUccCCGCccGCCCGGc -3'
miRNA:   3'- gugaGUCGGGGCAcaGGUGa-CGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 14013 0.67 0.682106
Target:  5'- cCACUC-GCCCCGaGUCCA--GCCCc- -3'
miRNA:   3'- -GUGAGuCGGGGCaCAGGUgaCGGGuc -5'
28986 3' -59.8 NC_006146.1 + 14287 1.07 0.001772
Target:  5'- cCACUCAGCCCCGUGUCCACUGCCCAGu -3'
miRNA:   3'- -GUGAGUCGGGGCACAGGUGACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 15085 0.67 0.730767
Target:  5'- cCGCUCAGCCCaccacUCCACcacaCCCAGg -3'
miRNA:   3'- -GUGAGUCGGGgcac-AGGUGac--GGGUC- -5'
28986 3' -59.8 NC_006146.1 + 16622 0.68 0.642423
Target:  5'- ---gCAGCCCCGUccCCGCccGCCCGGc -3'
miRNA:   3'- gugaGUCGGGGCAcaGGUGa-CGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 17091 0.67 0.682106
Target:  5'- cCACUC-GCCCCGaGUCCA--GCCCc- -3'
miRNA:   3'- -GUGAGuCGGGGCaCAGGUgaCGGGuc -5'
28986 3' -59.8 NC_006146.1 + 17365 1.07 0.001772
Target:  5'- cCACUCAGCCCCGUGUCCACUGCCCAGu -3'
miRNA:   3'- -GUGAGUCGGGGCACAGGUGACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 18163 0.67 0.730767
Target:  5'- cCGCUCAGCCCaccacUCCACcacaCCCAGg -3'
miRNA:   3'- -GUGAGUCGGGgcac-AGGUGac--GGGUC- -5'
28986 3' -59.8 NC_006146.1 + 19700 0.68 0.642423
Target:  5'- ---gCAGCCCCGUccCCGCccGCCCGGc -3'
miRNA:   3'- gugaGUCGGGGCAcaGGUGa-CGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 20169 0.67 0.682106
Target:  5'- cCACUC-GCCCCGaGUCCA--GCCCc- -3'
miRNA:   3'- -GUGAGuCGGGGCaCAGGUgaCGGGuc -5'
28986 3' -59.8 NC_006146.1 + 20443 1.07 0.001772
Target:  5'- cCACUCAGCCCCGUGUCCACUGCCCAGu -3'
miRNA:   3'- -GUGAGUCGGGGCACAGGUGACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 21241 0.67 0.730767
Target:  5'- cCGCUCAGCCCaccacUCCACcacaCCCAGg -3'
miRNA:   3'- -GUGAGUCGGGgcac-AGGUGac--GGGUC- -5'
28986 3' -59.8 NC_006146.1 + 22778 0.68 0.642423
Target:  5'- ---gCAGCCCCGUccCCGCccGCCCGGc -3'
miRNA:   3'- gugaGUCGGGGCAcaGGUGa-CGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 23247 0.67 0.682106
Target:  5'- cCACUC-GCCCCGaGUCCA--GCCCc- -3'
miRNA:   3'- -GUGAGuCGGGGCaCAGGUgaCGGGuc -5'
28986 3' -59.8 NC_006146.1 + 23521 1.07 0.001772
Target:  5'- cCACUCAGCCCCGUGUCCACUGCCCAGu -3'
miRNA:   3'- -GUGAGUCGGGGCACAGGUGACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 24319 0.67 0.730767
Target:  5'- cCGCUCAGCCCaccacUCCACcacaCCCAGg -3'
miRNA:   3'- -GUGAGUCGGGgcac-AGGUGac--GGGUC- -5'
28986 3' -59.8 NC_006146.1 + 25856 0.68 0.642423
Target:  5'- ---gCAGCCCCGUccCCGCccGCCCGGc -3'
miRNA:   3'- gugaGUCGGGGCAcaGGUGa-CGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 26325 0.67 0.682106
Target:  5'- cCACUC-GCCCCGaGUCCA--GCCCc- -3'
miRNA:   3'- -GUGAGuCGGGGCaCAGGUgaCGGGuc -5'
28986 3' -59.8 NC_006146.1 + 26599 1.07 0.001772
Target:  5'- cCACUCAGCCCCGUGUCCACUGCCCAGu -3'
miRNA:   3'- -GUGAGUCGGGGCACAGGUGACGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.