miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28986 3' -59.8 NC_006146.1 + 27397 0.67 0.730767
Target:  5'- cCGCUCAGCCCaccacUCCACcacaCCCAGg -3'
miRNA:   3'- -GUGAGUCGGGgcac-AGGUGac--GGGUC- -5'
28986 3' -59.8 NC_006146.1 + 29403 0.67 0.682106
Target:  5'- cCACUC-GCCCCGaGUCCA--GCCCc- -3'
miRNA:   3'- -GUGAGuCGGGGCaCAGGUgaCGGGuc -5'
28986 3' -59.8 NC_006146.1 + 29677 1.07 0.001772
Target:  5'- cCACUCAGCCCCGUGUCCACUGCCCAGu -3'
miRNA:   3'- -GUGAGUCGGGGCACAGGUGACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 33313 0.66 0.768291
Target:  5'- cCGCUCGGUCCUGggGcUCCGggGUCCGGg -3'
miRNA:   3'- -GUGAGUCGGGGCa-C-AGGUgaCGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 34258 0.67 0.721163
Target:  5'- ---cCGGCCCCGUG-CCACgggaccCCCGGc -3'
miRNA:   3'- gugaGUCGGGGCACaGGUGac----GGGUC- -5'
28986 3' -59.8 NC_006146.1 + 40933 0.66 0.740291
Target:  5'- gGC-CAGCCCCaagcacggGcCCGcCUGCCCGGa -3'
miRNA:   3'- gUGaGUCGGGGca------CaGGU-GACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 41598 0.66 0.759061
Target:  5'- gGCggagaGGCCCgGggggcugGUCCGCUggGCCCGGg -3'
miRNA:   3'- gUGag---UCGGGgCa------CAGGUGA--CGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 42051 0.66 0.749725
Target:  5'- uCACgaGGCCCCGguagccccUGgCCACgGCCCGGg -3'
miRNA:   3'- -GUGagUCGGGGC--------ACaGGUGaCGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 48278 0.68 0.636448
Target:  5'- gCugUCGGCCgCCGUGagcgaguacguggaCCgcacGCUGCCCGGg -3'
miRNA:   3'- -GugAGUCGG-GGCACa-------------GG----UGACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 49931 0.68 0.632464
Target:  5'- cCACUCGGUCCCGgacGUCCGCcguguacuUGCgCAc -3'
miRNA:   3'- -GUGAGUCGGGGCa--CAGGUG--------ACGgGUc -5'
28986 3' -59.8 NC_006146.1 + 58051 0.67 0.682106
Target:  5'- gACgUCGGCCUCGggGUCCACguugGCCUu- -3'
miRNA:   3'- gUG-AGUCGGGGCa-CAGGUGa---CGGGuc -5'
28986 3' -59.8 NC_006146.1 + 58838 0.66 0.759061
Target:  5'- aGCUCggggacaaagAGCCCCGUGaaga-UGCCCGGg -3'
miRNA:   3'- gUGAG----------UCGGGGCACaggugACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 67302 0.69 0.602614
Target:  5'- cCGC-CAGCuCCCGggccacGUCCGCgcugagcccgGCCCAGg -3'
miRNA:   3'- -GUGaGUCG-GGGCa-----CAGGUGa---------CGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 67429 0.68 0.652375
Target:  5'- ---cCAGCCuCCGUGgcuUCCugUGCCUGGc -3'
miRNA:   3'- gugaGUCGG-GGCAC---AGGugACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 67726 0.71 0.486674
Target:  5'- gGCaaaGGCCUCG-GUCCGCUccGCCCAGa -3'
miRNA:   3'- gUGag-UCGGGGCaCAGGUGA--CGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 67906 0.67 0.682106
Target:  5'- aACUgGGCCUCGUGggagCCGaaggUGCUCAGg -3'
miRNA:   3'- gUGAgUCGGGGCACa---GGUg---ACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 71397 0.7 0.543639
Target:  5'- aCGCUaCGGCCCCGcUGgacuUCUACUGgCCCAc -3'
miRNA:   3'- -GUGA-GUCGGGGC-AC----AGGUGAC-GGGUc -5'
28986 3' -59.8 NC_006146.1 + 76686 0.66 0.759061
Target:  5'- aACUguGuCCCCGggaccGUCUACUGCCa-- -3'
miRNA:   3'- gUGAguC-GGGGCa----CAGGUGACGGguc -5'
28986 3' -59.8 NC_006146.1 + 92745 0.7 0.524373
Target:  5'- -uCUgAGaCCCCaggGUGUagCCGCUGCCCAGg -3'
miRNA:   3'- guGAgUC-GGGG---CACA--GGUGACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 93989 0.68 0.622505
Target:  5'- gGCUgCAGCCCCGcgGUcaccucuggcucCCACgugcgGCCCGGc -3'
miRNA:   3'- gUGA-GUCGGGGCa-CA------------GGUGa----CGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.