miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28986 3' -59.8 NC_006146.1 + 160164 0.68 0.652375
Target:  5'- cCGCaUGGCCCCGgcugGcUCUgGCUGCCCAGa -3'
miRNA:   3'- -GUGaGUCGGGGCa---C-AGG-UGACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 160085 0.69 0.602614
Target:  5'- -cCUguGgCCCGUGUagCCGgUGCCCAGc -3'
miRNA:   3'- guGAguCgGGGCACA--GGUgACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 151760 0.69 0.612552
Target:  5'- aCGCU-GGCCCCGUcagCCuugcgcCUGCCCAGu -3'
miRNA:   3'- -GUGAgUCGGGGCAca-GGu-----GACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 149460 0.66 0.784609
Target:  5'- gGCUCAGCUCCGUGgagaagcagagcUCCcccauggggaccCUGCCCu- -3'
miRNA:   3'- gUGAGUCGGGGCAC------------AGGu-----------GACGGGuc -5'
28986 3' -59.8 NC_006146.1 + 148705 0.71 0.486674
Target:  5'- uGCUCuccacccuGGCCCCGggGUCCACcguggUGaCCCAGg -3'
miRNA:   3'- gUGAG--------UCGGGGCa-CAGGUG-----AC-GGGUC- -5'
28986 3' -59.8 NC_006146.1 + 147044 0.66 0.768291
Target:  5'- gACgCGGCCCCGag-CCAg-GCCCGGg -3'
miRNA:   3'- gUGaGUCGGGGCacaGGUgaCGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 143525 0.69 0.592696
Target:  5'- -uCUguGCCCCGguugCUGCUGUCCAGa -3'
miRNA:   3'- guGAguCGGGGCaca-GGUGACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 141316 0.68 0.622505
Target:  5'- gGCUgAGCCCCcgggGUCCugU-CCCAGc -3'
miRNA:   3'- gUGAgUCGGGGca--CAGGugAcGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 137542 0.72 0.44145
Target:  5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3'
miRNA:   3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 137449 0.72 0.44145
Target:  5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3'
miRNA:   3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 137356 0.72 0.44145
Target:  5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3'
miRNA:   3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 137263 0.72 0.44145
Target:  5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3'
miRNA:   3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 137170 0.72 0.44145
Target:  5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3'
miRNA:   3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 137077 0.72 0.44145
Target:  5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3'
miRNA:   3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 136984 0.72 0.44145
Target:  5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3'
miRNA:   3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 136891 0.72 0.44145
Target:  5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3'
miRNA:   3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 136798 0.72 0.44145
Target:  5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3'
miRNA:   3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 136723 0.75 0.287437
Target:  5'- gGC-CGGCCgcugCCGgGUCCGCUGCCCGGu -3'
miRNA:   3'- gUGaGUCGG----GGCaCAGGUGACGGGUC- -5'
28986 3' -59.8 NC_006146.1 + 136680 0.67 0.69195
Target:  5'- gGCcggguGCCCCuggGUCCGCUGCCCc- -3'
miRNA:   3'- gUGagu--CGGGGca-CAGGUGACGGGuc -5'
28986 3' -59.8 NC_006146.1 + 136613 0.72 0.44145
Target:  5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3'
miRNA:   3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.