Results 21 - 40 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28986 | 3' | -59.8 | NC_006146.1 | + | 23521 | 1.07 | 0.001772 |
Target: 5'- cCACUCAGCCCCGUGUCCACUGCCCAGu -3' miRNA: 3'- -GUGAGUCGGGGCACAGGUGACGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 20443 | 1.07 | 0.001772 |
Target: 5'- cCACUCAGCCCCGUGUCCACUGCCCAGu -3' miRNA: 3'- -GUGAGUCGGGGCACAGGUGACGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 137542 | 0.72 | 0.44145 |
Target: 5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3' miRNA: 3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 137263 | 0.72 | 0.44145 |
Target: 5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3' miRNA: 3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 93989 | 0.68 | 0.622505 |
Target: 5'- gGCUgCAGCCCCGcgGUcaccucuggcucCCACgugcgGCCCGGc -3' miRNA: 3'- gUGA-GUCGGGGCa-CA------------GGUGa----CGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 67302 | 0.69 | 0.602614 |
Target: 5'- cCGC-CAGCuCCCGggccacGUCCGCgcugagcccgGCCCAGg -3' miRNA: 3'- -GUGaGUCG-GGGCa-----CAGGUGa---------CGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 67726 | 0.71 | 0.486674 |
Target: 5'- gGCaaaGGCCUCG-GUCCGCUccGCCCAGa -3' miRNA: 3'- gUGag-UCGGGGCaCAGGUGA--CGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 137170 | 0.72 | 0.44145 |
Target: 5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3' miRNA: 3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 143525 | 0.69 | 0.592696 |
Target: 5'- -uCUguGCCCCGguugCUGCUGUCCAGa -3' miRNA: 3'- guGAguCGGGGCaca-GGUGACGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 137077 | 0.72 | 0.44145 |
Target: 5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3' miRNA: 3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 135127 | 0.7 | 0.514837 |
Target: 5'- uGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3' miRNA: 3'- gUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 109301 | 0.7 | 0.533975 |
Target: 5'- -uCUCGGCCCCGgccgcggCCGCUGCagCCGGc -3' miRNA: 3'- guGAGUCGGGGCaca----GGUGACG--GGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 17365 | 1.07 | 0.001772 |
Target: 5'- cCACUCAGCCCCGUGUCCACUGCCCAGu -3' miRNA: 3'- -GUGAGUCGGGGCACAGGUGACGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 14287 | 1.07 | 0.001772 |
Target: 5'- cCACUCAGCCCCGUGUCCACUGCCCAGu -3' miRNA: 3'- -GUGAGUCGGGGCACAGGUGACGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 137449 | 0.72 | 0.44145 |
Target: 5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3' miRNA: 3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 137356 | 0.72 | 0.44145 |
Target: 5'- cCGCUCcggcgggggguGGCCgggccgcugCCGgGUCCGCUGCCCGGu -3' miRNA: 3'- -GUGAG-----------UCGG---------GGCaCAGGUGACGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 107537 | 0.66 | 0.786397 |
Target: 5'- aACaUgAGCCCCaGgaggGcCCugUGCCCAGu -3' miRNA: 3'- gUG-AgUCGGGG-Ca---CaGGugACGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 141316 | 0.68 | 0.622505 |
Target: 5'- gGCUgAGCCCCcgggGUCCugU-CCCAGc -3' miRNA: 3'- gUGAgUCGGGGca--CAGGugAcGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 151760 | 0.69 | 0.612552 |
Target: 5'- aCGCU-GGCCCCGUcagCCuugcgcCUGCCCAGu -3' miRNA: 3'- -GUGAgUCGGGGCAca-GGu-----GACGGGUC- -5' |
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28986 | 3' | -59.8 | NC_006146.1 | + | 160085 | 0.69 | 0.602614 |
Target: 5'- -cCUguGgCCCGUGUagCCGgUGCCCAGc -3' miRNA: 3'- guGAguCgGGGCACA--GGUgACGGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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