Results 1 - 20 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28986 | 5' | -50.8 | NC_006146.1 | + | 15229 | 0.66 | 0.996181 |
Target: 5'- gCCCgAGAccUGGGGGCcCGGGCC-UGg -3' miRNA: 3'- -GGGaUUUucAUCCCUGaGUCCGGuAC- -5' |
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28986 | 5' | -50.8 | NC_006146.1 | + | 167252 | 0.66 | 0.996181 |
Target: 5'- uCCCUGGAuGUcGGGGa--GGGCCcgGg -3' miRNA: 3'- -GGGAUUUuCAuCCCUgagUCCGGuaC- -5' |
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28986 | 5' | -50.8 | NC_006146.1 | + | 100058 | 0.66 | 0.996181 |
Target: 5'- gCCgGGAAG-AGGGGCUggaagaugAGGCCGUGu -3' miRNA: 3'- gGGaUUUUCaUCCCUGAg-------UCCGGUAC- -5' |
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28986 | 5' | -50.8 | NC_006146.1 | + | 169116 | 0.66 | 0.996181 |
Target: 5'- uCCCUGGAuGUcGGGGa--GGGCCcgGg -3' miRNA: 3'- -GGGAUUUuCAuCCCUgagUCCGGuaC- -5' |
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28986 | 5' | -50.8 | NC_006146.1 | + | 11351 | 0.66 | 0.996181 |
Target: 5'- -aCUAAGGGUGGaGcGAagccCUCGGGCCAa- -3' miRNA: 3'- ggGAUUUUCAUC-C-CU----GAGUCCGGUac -5' |
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28986 | 5' | -50.8 | NC_006146.1 | + | 170048 | 0.66 | 0.996181 |
Target: 5'- uCCCUGGAuGUcGGGGa--GGGCCcgGg -3' miRNA: 3'- -GGGAUUUuCAuCCCUgagUCCGGuaC- -5' |
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28986 | 5' | -50.8 | NC_006146.1 | + | 168184 | 0.66 | 0.996181 |
Target: 5'- uCCCUGGAuGUcGGGGa--GGGCCcgGg -3' miRNA: 3'- -GGGAUUUuCAuCCCUgagUCCGGuaC- -5' |
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28986 | 5' | -50.8 | NC_006146.1 | + | 82258 | 0.66 | 0.996181 |
Target: 5'- uCCCUGuaucccAGGUAGGGAaUCggcgGGGCC-UGg -3' miRNA: 3'- -GGGAUu-----UUCAUCCCUgAG----UCCGGuAC- -5' |
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28986 | 5' | -50.8 | NC_006146.1 | + | 18307 | 0.66 | 0.996181 |
Target: 5'- gCCCgAGAccUGGGGGCcCGGGCC-UGg -3' miRNA: 3'- -GGGaUUUucAUCCCUGaGUCCGGuAC- -5' |
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28986 | 5' | -50.8 | NC_006146.1 | + | 145398 | 0.66 | 0.996181 |
Target: 5'- aCCCUcAGGAGUGGaaGC-CGGGCCAg- -3' miRNA: 3'- -GGGA-UUUUCAUCccUGaGUCCGGUac -5' |
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28986 | 5' | -50.8 | NC_006146.1 | + | 113433 | 0.66 | 0.996181 |
Target: 5'- cCCCUGucuuauGGGugUCcGGCCAa- -3' miRNA: 3'- -GGGAUuuucauCCCugAGuCCGGUac -5' |
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28986 | 5' | -50.8 | NC_006146.1 | + | 27540 | 0.66 | 0.996181 |
Target: 5'- gCCCgAGAccUGGGGGCcCGGGCC-UGg -3' miRNA: 3'- -GGGaUUUucAUCCCUGaGUCCGGuAC- -5' |
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28986 | 5' | -50.8 | NC_006146.1 | + | 21385 | 0.66 | 0.996181 |
Target: 5'- gCCCgAGAccUGGGGGCcCGGGCC-UGg -3' miRNA: 3'- -GGGaUUUucAUCCCUGaGUCCGGuAC- -5' |
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28986 | 5' | -50.8 | NC_006146.1 | + | 24462 | 0.66 | 0.996181 |
Target: 5'- gCCCgAGAccUGGGGGCcCGGGCC-UGg -3' miRNA: 3'- -GGGaUUUucAUCCCUGaGUCCGGuAC- -5' |
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28986 | 5' | -50.8 | NC_006146.1 | + | 9064 | 0.66 | 0.99553 |
Target: 5'- -aCUGGGAGccUGGGGGCgggggCAGGCUGUu -3' miRNA: 3'- ggGAUUUUC--AUCCCUGa----GUCCGGUAc -5' |
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28986 | 5' | -50.8 | NC_006146.1 | + | 61603 | 0.66 | 0.99553 |
Target: 5'- uCCCUGcAAuuuuacaagcGGUcacaaGGGGGCUCGcGGCCAg- -3' miRNA: 3'- -GGGAU-UU----------UCA-----UCCCUGAGU-CCGGUac -5' |
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28986 | 5' | -50.8 | NC_006146.1 | + | 101999 | 0.66 | 0.99553 |
Target: 5'- uCCCUugc--UAGGGGCUCuGGGCUGUc -3' miRNA: 3'- -GGGAuuuucAUCCCUGAG-UCCGGUAc -5' |
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28986 | 5' | -50.8 | NC_006146.1 | + | 100891 | 0.66 | 0.99553 |
Target: 5'- aCCUGucGGccuGGGuCUC-GGCCGUGg -3' miRNA: 3'- gGGAUuuUCau-CCCuGAGuCCGGUAC- -5' |
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28986 | 5' | -50.8 | NC_006146.1 | + | 117377 | 0.66 | 0.99553 |
Target: 5'- uCUCUGGcacauGUGGuGGAC-CAGGCUGUGa -3' miRNA: 3'- -GGGAUUuu---CAUC-CCUGaGUCCGGUAC- -5' |
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28986 | 5' | -50.8 | NC_006146.1 | + | 22913 | 0.66 | 0.994791 |
Target: 5'- gCCCUGGAgaggGGUGaGGACUUuGGCCucUGg -3' miRNA: 3'- -GGGAUUU----UCAUcCCUGAGuCCGGu-AC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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