miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28986 5' -50.8 NC_006146.1 + 15229 0.66 0.996181
Target:  5'- gCCCgAGAccUGGGGGCcCGGGCC-UGg -3'
miRNA:   3'- -GGGaUUUucAUCCCUGaGUCCGGuAC- -5'
28986 5' -50.8 NC_006146.1 + 19835 0.66 0.994791
Target:  5'- gCCCUGGAgaggGGUGaGGACUUuGGCCucUGg -3'
miRNA:   3'- -GGGAUUU----UCAUcCCUGAGuCCGGu-AC- -5'
28986 5' -50.8 NC_006146.1 + 22913 0.66 0.994791
Target:  5'- gCCCUGGAgaggGGUGaGGACUUuGGCCucUGg -3'
miRNA:   3'- -GGGAUUU----UCAUcCCUGAGuCCGGu-AC- -5'
28986 5' -50.8 NC_006146.1 + 25991 0.66 0.994791
Target:  5'- gCCCUGGAgaggGGUGaGGACUUuGGCCucUGg -3'
miRNA:   3'- -GGGAUUU----UCAUcCCUGAGuCCGGu-AC- -5'
28986 5' -50.8 NC_006146.1 + 29069 0.66 0.994791
Target:  5'- gCCCUGGAgaggGGUGaGGACUUuGGCCucUGg -3'
miRNA:   3'- -GGGAUUU----UCAUcCCUGAGuCCGGu-AC- -5'
28986 5' -50.8 NC_006146.1 + 127591 0.66 0.993957
Target:  5'- uCCC----AGUAGGGuC-CGGGCCAg- -3'
miRNA:   3'- -GGGauuuUCAUCCCuGaGUCCGGUac -5'
28986 5' -50.8 NC_006146.1 + 80470 0.66 0.993018
Target:  5'- cCCCggGGAGGUAGGGugUCcagaccuGaGCCGa- -3'
miRNA:   3'- -GGGa-UUUUCAUCCCugAGu------C-CGGUac -5'
28986 5' -50.8 NC_006146.1 + 131603 0.66 0.993018
Target:  5'- aCUgUGGuAGUGGGGGCUguGGUaGUGg -3'
miRNA:   3'- -GGgAUUuUCAUCCCUGAguCCGgUAC- -5'
28986 5' -50.8 NC_006146.1 + 120406 0.66 0.993018
Target:  5'- aCCgacGGGGUGGGGGC-CAaccuGGCCAUc -3'
miRNA:   3'- gGGau-UUUCAUCCCUGaGU----CCGGUAc -5'
28986 5' -50.8 NC_006146.1 + 16757 0.66 0.994791
Target:  5'- gCCCUGGAgaggGGUGaGGACUUuGGCCucUGg -3'
miRNA:   3'- -GGGAUUU----UCAUcCCUGAGuCCGGu-AC- -5'
28986 5' -50.8 NC_006146.1 + 13679 0.66 0.994791
Target:  5'- gCCCUGGAgaggGGUGaGGACUUuGGCCucUGg -3'
miRNA:   3'- -GGGAUUU----UCAUcCCUGAGuCCGGu-AC- -5'
28986 5' -50.8 NC_006146.1 + 117377 0.66 0.99553
Target:  5'- uCUCUGGcacauGUGGuGGAC-CAGGCUGUGa -3'
miRNA:   3'- -GGGAUUuu---CAUC-CCUGaGUCCGGUAC- -5'
28986 5' -50.8 NC_006146.1 + 18307 0.66 0.996181
Target:  5'- gCCCgAGAccUGGGGGCcCGGGCC-UGg -3'
miRNA:   3'- -GGGaUUUucAUCCCUGaGUCCGGuAC- -5'
28986 5' -50.8 NC_006146.1 + 21385 0.66 0.996181
Target:  5'- gCCCgAGAccUGGGGGCcCGGGCC-UGg -3'
miRNA:   3'- -GGGaUUUucAUCCCUGaGUCCGGuAC- -5'
28986 5' -50.8 NC_006146.1 + 24462 0.66 0.996181
Target:  5'- gCCCgAGAccUGGGGGCcCGGGCC-UGg -3'
miRNA:   3'- -GGGaUUUucAUCCCUGaGUCCGGuAC- -5'
28986 5' -50.8 NC_006146.1 + 27540 0.66 0.996181
Target:  5'- gCCCgAGAccUGGGGGCcCGGGCC-UGg -3'
miRNA:   3'- -GGGaUUUucAUCCCUGaGUCCGGuAC- -5'
28986 5' -50.8 NC_006146.1 + 113433 0.66 0.996181
Target:  5'- cCCCUGucuuauGGGugUCcGGCCAa- -3'
miRNA:   3'- -GGGAUuuucauCCCugAGuCCGGUac -5'
28986 5' -50.8 NC_006146.1 + 145398 0.66 0.996181
Target:  5'- aCCCUcAGGAGUGGaaGC-CGGGCCAg- -3'
miRNA:   3'- -GGGA-UUUUCAUCccUGaGUCCGGUac -5'
28986 5' -50.8 NC_006146.1 + 82258 0.66 0.996181
Target:  5'- uCCCUGuaucccAGGUAGGGAaUCggcgGGGCC-UGg -3'
miRNA:   3'- -GGGAUu-----UUCAUCCCUgAG----UCCGGuAC- -5'
28986 5' -50.8 NC_006146.1 + 9064 0.66 0.99553
Target:  5'- -aCUGGGAGccUGGGGGCgggggCAGGCUGUu -3'
miRNA:   3'- ggGAUUUUC--AUCCCUGa----GUCCGGUAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.