miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28986 5' -50.8 NC_006146.1 + 26639 1.1 0.008268
Target:  5'- cCCCUAAAAGUAGGGACUCAGGCCAUGc -3'
miRNA:   3'- -GGGAUUUUCAUCCCUGAGUCCGGUAC- -5'
28986 5' -50.8 NC_006146.1 + 23561 1.1 0.008268
Target:  5'- cCCCUAAAAGUAGGGACUCAGGCCAUGc -3'
miRNA:   3'- -GGGAUUUUCAUCCCUGAGUCCGGUAC- -5'
28986 5' -50.8 NC_006146.1 + 20483 1.1 0.008268
Target:  5'- cCCCUAAAAGUAGGGACUCAGGCCAUGc -3'
miRNA:   3'- -GGGAUUUUCAUCCCUGAGUCCGGUAC- -5'
28986 5' -50.8 NC_006146.1 + 17405 1.1 0.008268
Target:  5'- cCCCUAAAAGUAGGGACUCAGGCCAUGc -3'
miRNA:   3'- -GGGAUUUUCAUCCCUGAGUCCGGUAC- -5'
28986 5' -50.8 NC_006146.1 + 14327 1.1 0.008268
Target:  5'- cCCCUAAAAGUAGGGACUCAGGCCAUGc -3'
miRNA:   3'- -GGGAUUUUCAUCCCUGAGUCCGGUAC- -5'
28986 5' -50.8 NC_006146.1 + 44307 0.83 0.352091
Target:  5'- aCCggu-AGUGGGGGCUgGGGCCGUGg -3'
miRNA:   3'- gGGauuuUCAUCCCUGAgUCCGGUAC- -5'
28986 5' -50.8 NC_006146.1 + 97848 0.76 0.683487
Target:  5'- aCCUGGAGGaGGGGGCcgccgacccCGGGCCGUGg -3'
miRNA:   3'- gGGAUUUUCaUCCCUGa--------GUCCGGUAC- -5'
28986 5' -50.8 NC_006146.1 + 137834 0.76 0.714559
Target:  5'- aCCUGGAAGgcagGGGGGCUCGGGgUggGUGg -3'
miRNA:   3'- gGGAUUUUCa---UCCCUGAGUCCgG--UAC- -5'
28986 5' -50.8 NC_006146.1 + 36811 0.75 0.774413
Target:  5'- aUUUAAAAGUGGGGGCcCGGGUCAUu -3'
miRNA:   3'- gGGAUUUUCAUCCCUGaGUCCGGUAc -5'
28986 5' -50.8 NC_006146.1 + 82196 0.73 0.854474
Target:  5'- aCCCUGGuauGUAGGGcACUgGGGCUcuuGUGg -3'
miRNA:   3'- -GGGAUUuu-CAUCCC-UGAgUCCGG---UAC- -5'
28986 5' -50.8 NC_006146.1 + 39574 0.72 0.904538
Target:  5'- aUCCUGGAGGgcaugaagAGGGACUCcAGcccccccGCCAUGg -3'
miRNA:   3'- -GGGAUUUUCa-------UCCCUGAG-UC-------CGGUAC- -5'
28986 5' -50.8 NC_006146.1 + 82522 0.72 0.90518
Target:  5'- aCCCggauaugGAGcuGGUGGGGGCUgGGGCUguuGUGg -3'
miRNA:   3'- -GGGa------UUU--UCAUCCCUGAgUCCGG---UAC- -5'
28986 5' -50.8 NC_006146.1 + 46391 0.71 0.911459
Target:  5'- gCCUGGGAGgagaUAGaGACUCGGGCCGc- -3'
miRNA:   3'- gGGAUUUUC----AUCcCUGAGUCCGGUac -5'
28986 5' -50.8 NC_006146.1 + 149940 0.71 0.917487
Target:  5'- gCCCUcgGGGUugAGGGGCgccCAGGCguUGg -3'
miRNA:   3'- -GGGAuuUUCA--UCCCUGa--GUCCGguAC- -5'
28986 5' -50.8 NC_006146.1 + 96821 0.71 0.928784
Target:  5'- uCCCU---GGUGGGGACgggCGGGCagguUGg -3'
miRNA:   3'- -GGGAuuuUCAUCCCUGa--GUCCGgu--AC- -5'
28986 5' -50.8 NC_006146.1 + 143325 0.71 0.934052
Target:  5'- cCCCgucgAGAAGgguGGGuCUCAGGUCAc- -3'
miRNA:   3'- -GGGa---UUUUCau-CCCuGAGUCCGGUac -5'
28986 5' -50.8 NC_006146.1 + 1429 0.7 0.955448
Target:  5'- aUCCUGAccGAGUGGGGcACUggaaguaagacauaCGGGCCGg- -3'
miRNA:   3'- -GGGAUU--UUCAUCCC-UGA--------------GUCCGGUac -5'
28986 5' -50.8 NC_006146.1 + 51588 0.7 0.956629
Target:  5'- gCC--GAAGgGGGGACUgAGGCCGg- -3'
miRNA:   3'- gGGauUUUCaUCCCUGAgUCCGGUac -5'
28986 5' -50.8 NC_006146.1 + 34004 0.69 0.960412
Target:  5'- aCCUGGAAGgcagggGGGGGgUCGGGgCAg- -3'
miRNA:   3'- gGGAUUUUCa-----UCCCUgAGUCCgGUac -5'
28986 5' -50.8 NC_006146.1 + 101958 0.69 0.960412
Target:  5'- cCCCUGGc--UAGGGGCUCcGGGCUcUGg -3'
miRNA:   3'- -GGGAUUuucAUCCCUGAG-UCCGGuAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.