miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28986 5' -50.8 NC_006146.1 + 126004 0.69 0.970379
Target:  5'- gCUUGGGAGUGGGGGCggUGGGCUu-- -3'
miRNA:   3'- gGGAUUUUCAUCCCUGa-GUCCGGuac -5'
28986 5' -50.8 NC_006146.1 + 156742 0.68 0.975935
Target:  5'- gCCCUGcuGGUGGGG--UCGGGuCCcgGg -3'
miRNA:   3'- -GGGAUuuUCAUCCCugAGUCC-GGuaC- -5'
28986 5' -50.8 NC_006146.1 + 87655 0.68 0.975935
Target:  5'- gCCCUcguAGUacugcAGGGACa-GGGCCGUGu -3'
miRNA:   3'- -GGGAuuuUCA-----UCCCUGagUCCGGUAC- -5'
28986 5' -50.8 NC_006146.1 + 134166 0.68 0.980686
Target:  5'- aCCCUAAGAG-GGGGGCcugCAcGCCGa- -3'
miRNA:   3'- -GGGAUUUUCaUCCCUGa--GUcCGGUac -5'
28986 5' -50.8 NC_006146.1 + 82072 0.68 0.980686
Target:  5'- aCCUGGGAuacAGGGAgcCUCAGGCCc-- -3'
miRNA:   3'- gGGAUUUUca-UCCCU--GAGUCCGGuac -5'
28986 5' -50.8 NC_006146.1 + 19931 0.68 0.981965
Target:  5'- gCCCUGGGAGgccccuguccgcgAGGGAgaguCUCuGGCCGg- -3'
miRNA:   3'- -GGGAUUUUCa------------UCCCU----GAGuCCGGUac -5'
28986 5' -50.8 NC_006146.1 + 16853 0.68 0.981965
Target:  5'- gCCCUGGGAGgccccuguccgcgAGGGAgaguCUCuGGCCGg- -3'
miRNA:   3'- -GGGAUUUUCa------------UCCCU----GAGuCCGGUac -5'
28986 5' -50.8 NC_006146.1 + 29165 0.68 0.981965
Target:  5'- gCCCUGGGAGgccccuguccgcgAGGGAgaguCUCuGGCCGg- -3'
miRNA:   3'- -GGGAUUUUCa------------UCCCU----GAGuCCGGUac -5'
28986 5' -50.8 NC_006146.1 + 26087 0.68 0.981965
Target:  5'- gCCCUGGGAGgccccuguccgcgAGGGAgaguCUCuGGCCGg- -3'
miRNA:   3'- -GGGAUUUUCa------------UCCCU----GAGuCCGGUac -5'
28986 5' -50.8 NC_006146.1 + 23009 0.68 0.981965
Target:  5'- gCCCUGGGAGgccccuguccgcgAGGGAgaguCUCuGGCCGg- -3'
miRNA:   3'- -GGGAUUUUCa------------UCCCU----GAGuCCGGUac -5'
28986 5' -50.8 NC_006146.1 + 13775 0.68 0.981965
Target:  5'- gCCCUGGGAGgccccuguccgcgAGGGAgaguCUCuGGCCGg- -3'
miRNA:   3'- -GGGAUUUUCa------------UCCCU----GAGuCCGGUac -5'
28986 5' -50.8 NC_006146.1 + 74694 0.68 0.98258
Target:  5'- uUCUUGAGAGaacagGGGGGCUUacgcucaGGGCCAg- -3'
miRNA:   3'- -GGGAUUUUCa----UCCCUGAG-------UCCGGUac -5'
28986 5' -50.8 NC_006146.1 + 139100 0.68 0.982781
Target:  5'- gCCUGGAGuuggguugcGUGGGGugUCaauuggGGGCUGUGg -3'
miRNA:   3'- gGGAUUUU---------CAUCCCugAG------UCCGGUAC- -5'
28986 5' -50.8 NC_006146.1 + 57131 0.68 0.982781
Target:  5'- uCCCUAAuuucgGGGGGCUgGuGGCCGa- -3'
miRNA:   3'- -GGGAUUuuca-UCCCUGAgU-CCGGUac -5'
28986 5' -50.8 NC_006146.1 + 40871 0.67 0.986451
Target:  5'- aCCUcAGGGUGGuGGC-CAGGCCGUu -3'
miRNA:   3'- gGGAuUUUCAUCcCUGaGUCCGGUAc -5'
28986 5' -50.8 NC_006146.1 + 131425 0.67 0.986451
Target:  5'- gCCUUGGAGGcGGcGGGCUCcuGGGCCu-- -3'
miRNA:   3'- -GGGAUUUUCaUC-CCUGAG--UCCGGuac -5'
28986 5' -50.8 NC_006146.1 + 157983 0.67 0.986451
Target:  5'- gCCCUGuuuGUggacGGGGGCUCccGGGCCc-- -3'
miRNA:   3'- -GGGAUuuuCA----UCCCUGAG--UCCGGuac -5'
28986 5' -50.8 NC_006146.1 + 43256 0.67 0.988044
Target:  5'- cCCCUGGAGGgu-GGGCUUGGGCa--- -3'
miRNA:   3'- -GGGAUUUUCaucCCUGAGUCCGguac -5'
28986 5' -50.8 NC_006146.1 + 158254 0.67 0.988044
Target:  5'- gCCCUu-GAGccacucggGGGGACUCuGGCCc-- -3'
miRNA:   3'- -GGGAuuUUCa-------UCCCUGAGuCCGGuac -5'
28986 5' -50.8 NC_006146.1 + 35129 0.67 0.989489
Target:  5'- cCCCggggugcuGGGGUGGGGgauggGCUCAGGCa--- -3'
miRNA:   3'- -GGGau------UUUCAUCCC-----UGAGUCCGguac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.