Results 21 - 40 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28986 | 5' | -50.8 | NC_006146.1 | + | 19835 | 0.66 | 0.994791 |
Target: 5'- gCCCUGGAgaggGGUGaGGACUUuGGCCucUGg -3' miRNA: 3'- -GGGAUUU----UCAUcCCUGAGuCCGGu-AC- -5' |
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28986 | 5' | -50.8 | NC_006146.1 | + | 16757 | 0.66 | 0.994791 |
Target: 5'- gCCCUGGAgaggGGUGaGGACUUuGGCCucUGg -3' miRNA: 3'- -GGGAUUU----UCAUcCCUGAGuCCGGu-AC- -5' |
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28986 | 5' | -50.8 | NC_006146.1 | + | 13679 | 0.66 | 0.994791 |
Target: 5'- gCCCUGGAgaggGGUGaGGACUUuGGCCucUGg -3' miRNA: 3'- -GGGAUUU----UCAUcCCUGAGuCCGGu-AC- -5' |
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28986 | 5' | -50.8 | NC_006146.1 | + | 3255 | 0.66 | 0.994791 |
Target: 5'- --aUAGGGGaccUGGGGACggcgCAGGCCAc- -3' miRNA: 3'- gggAUUUUC---AUCCCUGa---GUCCGGUac -5' |
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28986 | 5' | -50.8 | NC_006146.1 | + | 45326 | 0.66 | 0.994791 |
Target: 5'- cUCCUGGAcGUugcGGGGAUUCgggggAGGCCGg- -3' miRNA: 3'- -GGGAUUUuCA---UCCCUGAG-----UCCGGUac -5' |
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28986 | 5' | -50.8 | NC_006146.1 | + | 152026 | 0.66 | 0.994791 |
Target: 5'- ------cAGUGGGGGCUgAGGCCc-- -3' miRNA: 3'- gggauuuUCAUCCCUGAgUCCGGuac -5' |
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28986 | 5' | -50.8 | NC_006146.1 | + | 22913 | 0.66 | 0.994791 |
Target: 5'- gCCCUGGAgaggGGUGaGGACUUuGGCCucUGg -3' miRNA: 3'- -GGGAUUU----UCAUcCCUGAGuCCGGu-AC- -5' |
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28986 | 5' | -50.8 | NC_006146.1 | + | 25991 | 0.66 | 0.994791 |
Target: 5'- gCCCUGGAgaggGGUGaGGACUUuGGCCucUGg -3' miRNA: 3'- -GGGAUUU----UCAUcCCUGAGuCCGGu-AC- -5' |
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28986 | 5' | -50.8 | NC_006146.1 | + | 29069 | 0.66 | 0.994791 |
Target: 5'- gCCCUGGAgaggGGUGaGGACUUuGGCCucUGg -3' miRNA: 3'- -GGGAUUU----UCAUcCCUGAGuCCGGu-AC- -5' |
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28986 | 5' | -50.8 | NC_006146.1 | + | 127591 | 0.66 | 0.993957 |
Target: 5'- uCCC----AGUAGGGuC-CGGGCCAg- -3' miRNA: 3'- -GGGauuuUCAUCCCuGaGUCCGGUac -5' |
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28986 | 5' | -50.8 | NC_006146.1 | + | 80470 | 0.66 | 0.993018 |
Target: 5'- cCCCggGGAGGUAGGGugUCcagaccuGaGCCGa- -3' miRNA: 3'- -GGGa-UUUUCAUCCCugAGu------C-CGGUac -5' |
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28986 | 5' | -50.8 | NC_006146.1 | + | 131603 | 0.66 | 0.993018 |
Target: 5'- aCUgUGGuAGUGGGGGCUguGGUaGUGg -3' miRNA: 3'- -GGgAUUuUCAUCCCUGAguCCGgUAC- -5' |
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28986 | 5' | -50.8 | NC_006146.1 | + | 120406 | 0.66 | 0.993018 |
Target: 5'- aCCgacGGGGUGGGGGC-CAaccuGGCCAUc -3' miRNA: 3'- gGGau-UUUCAUCCCUGaGU----CCGGUAc -5' |
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28986 | 5' | -50.8 | NC_006146.1 | + | 78611 | 0.67 | 0.991967 |
Target: 5'- gCCCgGGGGGUugaAGGuGGCUCAGaguggguugaGCCAUGa -3' miRNA: 3'- -GGGaUUUUCA---UCC-CUGAGUC----------CGGUAC- -5' |
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28986 | 5' | -50.8 | NC_006146.1 | + | 12560 | 0.67 | 0.991967 |
Target: 5'- aCUCUGGAGGacGGGGACgcggaGGGCC-UGa -3' miRNA: 3'- -GGGAUUUUCa-UCCCUGag---UCCGGuAC- -5' |
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28986 | 5' | -50.8 | NC_006146.1 | + | 15639 | 0.67 | 0.991967 |
Target: 5'- aCUCUGGAGGacGGGGACgcggaGGGCC-UGa -3' miRNA: 3'- -GGGAUUUUCa-UCCCUGag---UCCGGuAC- -5' |
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28986 | 5' | -50.8 | NC_006146.1 | + | 18717 | 0.67 | 0.991967 |
Target: 5'- aCUCUGGAGGacGGGGACgcggaGGGCC-UGa -3' miRNA: 3'- -GGGAUUUUCa-UCCCUGag---UCCGGuAC- -5' |
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28986 | 5' | -50.8 | NC_006146.1 | + | 21795 | 0.67 | 0.991967 |
Target: 5'- aCUCUGGAGGacGGGGACgcggaGGGCC-UGa -3' miRNA: 3'- -GGGAUUUUCa-UCCCUGag---UCCGGuAC- -5' |
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28986 | 5' | -50.8 | NC_006146.1 | + | 24873 | 0.67 | 0.991967 |
Target: 5'- aCUCUGGAGGacGGGGACgcggaGGGCC-UGa -3' miRNA: 3'- -GGGAUUUUCa-UCCCUGag---UCCGGuAC- -5' |
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28986 | 5' | -50.8 | NC_006146.1 | + | 27951 | 0.67 | 0.991967 |
Target: 5'- aCUCUGGAGGacGGGGACgcggaGGGCC-UGa -3' miRNA: 3'- -GGGAUUUUCa-UCCCUGag---UCCGGuAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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