miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28986 5' -50.8 NC_006146.1 + 1429 0.7 0.955448
Target:  5'- aUCCUGAccGAGUGGGGcACUggaaguaagacauaCGGGCCGg- -3'
miRNA:   3'- -GGGAUU--UUCAUCCC-UGA--------------GUCCGGUac -5'
28986 5' -50.8 NC_006146.1 + 3255 0.66 0.994791
Target:  5'- --aUAGGGGaccUGGGGACggcgCAGGCCAc- -3'
miRNA:   3'- gggAUUUUC---AUCCCUGa---GUCCGGUac -5'
28986 5' -50.8 NC_006146.1 + 8697 0.67 0.990669
Target:  5'- gCCCUGGgaguaacAAGUGGuGGGCaCGGGCUAg- -3'
miRNA:   3'- -GGGAUU-------UUCAUC-CCUGaGUCCGGUac -5'
28986 5' -50.8 NC_006146.1 + 9064 0.66 0.99553
Target:  5'- -aCUGGGAGccUGGGGGCgggggCAGGCUGUu -3'
miRNA:   3'- ggGAUUUUC--AUCCCUGa----GUCCGGUAc -5'
28986 5' -50.8 NC_006146.1 + 11351 0.66 0.996181
Target:  5'- -aCUAAGGGUGGaGcGAagccCUCGGGCCAa- -3'
miRNA:   3'- ggGAUUUUCAUC-C-CU----GAGUCCGGUac -5'
28986 5' -50.8 NC_006146.1 + 12560 0.67 0.991967
Target:  5'- aCUCUGGAGGacGGGGACgcggaGGGCC-UGa -3'
miRNA:   3'- -GGGAUUUUCa-UCCCUGag---UCCGGuAC- -5'
28986 5' -50.8 NC_006146.1 + 13679 0.66 0.994791
Target:  5'- gCCCUGGAgaggGGUGaGGACUUuGGCCucUGg -3'
miRNA:   3'- -GGGAUUU----UCAUcCCUGAGuCCGGu-AC- -5'
28986 5' -50.8 NC_006146.1 + 13775 0.68 0.981965
Target:  5'- gCCCUGGGAGgccccuguccgcgAGGGAgaguCUCuGGCCGg- -3'
miRNA:   3'- -GGGAUUUUCa------------UCCCU----GAGuCCGGUac -5'
28986 5' -50.8 NC_006146.1 + 14327 1.1 0.008268
Target:  5'- cCCCUAAAAGUAGGGACUCAGGCCAUGc -3'
miRNA:   3'- -GGGAUUUUCAUCCCUGAGUCCGGUAC- -5'
28986 5' -50.8 NC_006146.1 + 15229 0.66 0.996181
Target:  5'- gCCCgAGAccUGGGGGCcCGGGCC-UGg -3'
miRNA:   3'- -GGGaUUUucAUCCCUGaGUCCGGuAC- -5'
28986 5' -50.8 NC_006146.1 + 15639 0.67 0.991967
Target:  5'- aCUCUGGAGGacGGGGACgcggaGGGCC-UGa -3'
miRNA:   3'- -GGGAUUUUCa-UCCCUGag---UCCGGuAC- -5'
28986 5' -50.8 NC_006146.1 + 16757 0.66 0.994791
Target:  5'- gCCCUGGAgaggGGUGaGGACUUuGGCCucUGg -3'
miRNA:   3'- -GGGAUUU----UCAUcCCUGAGuCCGGu-AC- -5'
28986 5' -50.8 NC_006146.1 + 16853 0.68 0.981965
Target:  5'- gCCCUGGGAGgccccuguccgcgAGGGAgaguCUCuGGCCGg- -3'
miRNA:   3'- -GGGAUUUUCa------------UCCCU----GAGuCCGGUac -5'
28986 5' -50.8 NC_006146.1 + 17405 1.1 0.008268
Target:  5'- cCCCUAAAAGUAGGGACUCAGGCCAUGc -3'
miRNA:   3'- -GGGAUUUUCAUCCCUGAGUCCGGUAC- -5'
28986 5' -50.8 NC_006146.1 + 18307 0.66 0.996181
Target:  5'- gCCCgAGAccUGGGGGCcCGGGCC-UGg -3'
miRNA:   3'- -GGGaUUUucAUCCCUGaGUCCGGuAC- -5'
28986 5' -50.8 NC_006146.1 + 18717 0.67 0.991967
Target:  5'- aCUCUGGAGGacGGGGACgcggaGGGCC-UGa -3'
miRNA:   3'- -GGGAUUUUCa-UCCCUGag---UCCGGuAC- -5'
28986 5' -50.8 NC_006146.1 + 19835 0.66 0.994791
Target:  5'- gCCCUGGAgaggGGUGaGGACUUuGGCCucUGg -3'
miRNA:   3'- -GGGAUUU----UCAUcCCUGAGuCCGGu-AC- -5'
28986 5' -50.8 NC_006146.1 + 19931 0.68 0.981965
Target:  5'- gCCCUGGGAGgccccuguccgcgAGGGAgaguCUCuGGCCGg- -3'
miRNA:   3'- -GGGAUUUUCa------------UCCCU----GAGuCCGGUac -5'
28986 5' -50.8 NC_006146.1 + 20483 1.1 0.008268
Target:  5'- cCCCUAAAAGUAGGGACUCAGGCCAUGc -3'
miRNA:   3'- -GGGAUUUUCAUCCCUGAGUCCGGUAC- -5'
28986 5' -50.8 NC_006146.1 + 21385 0.66 0.996181
Target:  5'- gCCCgAGAccUGGGGGCcCGGGCC-UGg -3'
miRNA:   3'- -GGGaUUUucAUCCCUGaGUCCGGuAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.