miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28986 5' -50.8 NC_006146.1 + 14327 1.1 0.008268
Target:  5'- cCCCUAAAAGUAGGGACUCAGGCCAUGc -3'
miRNA:   3'- -GGGAUUUUCAUCCCUGAGUCCGGUAC- -5'
28986 5' -50.8 NC_006146.1 + 82072 0.68 0.980686
Target:  5'- aCCUGGGAuacAGGGAgcCUCAGGCCc-- -3'
miRNA:   3'- gGGAUUUUca-UCCCU--GAGUCCGGuac -5'
28986 5' -50.8 NC_006146.1 + 57131 0.68 0.982781
Target:  5'- uCCCUAAuuucgGGGGGCUgGuGGCCGa- -3'
miRNA:   3'- -GGGAUUuuca-UCCCUGAgU-CCGGUac -5'
28986 5' -50.8 NC_006146.1 + 11351 0.66 0.996181
Target:  5'- -aCUAAGGGUGGaGcGAagccCUCGGGCCAa- -3'
miRNA:   3'- ggGAUUUUCAUC-C-CU----GAGUCCGGUac -5'
28986 5' -50.8 NC_006146.1 + 26639 1.1 0.008268
Target:  5'- cCCCUAAAAGUAGGGACUCAGGCCAUGc -3'
miRNA:   3'- -GGGAUUUUCAUCCCUGAGUCCGGUAC- -5'
28986 5' -50.8 NC_006146.1 + 44307 0.83 0.352091
Target:  5'- aCCggu-AGUGGGGGCUgGGGCCGUGg -3'
miRNA:   3'- gGGauuuUCAUCCCUGAgUCCGGUAC- -5'
28986 5' -50.8 NC_006146.1 + 137834 0.76 0.714559
Target:  5'- aCCUGGAAGgcagGGGGGCUCGGGgUggGUGg -3'
miRNA:   3'- gGGAUUUUCa---UCCCUGAGUCCgG--UAC- -5'
28986 5' -50.8 NC_006146.1 + 39574 0.72 0.904538
Target:  5'- aUCCUGGAGGgcaugaagAGGGACUCcAGcccccccGCCAUGg -3'
miRNA:   3'- -GGGAUUUUCa-------UCCCUGAG-UC-------CGGUAC- -5'
28986 5' -50.8 NC_006146.1 + 1429 0.7 0.955448
Target:  5'- aUCCUGAccGAGUGGGGcACUggaaguaagacauaCGGGCCGg- -3'
miRNA:   3'- -GGGAUU--UUCAUCCC-UGA--------------GUCCGGUac -5'
28986 5' -50.8 NC_006146.1 + 134166 0.68 0.980686
Target:  5'- aCCCUAAGAG-GGGGGCcugCAcGCCGa- -3'
miRNA:   3'- -GGGAUUUUCaUCCCUGa--GUcCGGUac -5'
28986 5' -50.8 NC_006146.1 + 34004 0.69 0.960412
Target:  5'- aCCUGGAAGgcagggGGGGGgUCGGGgCAg- -3'
miRNA:   3'- gGGAUUUUCa-----UCCCUgAGUCCgGUac -5'
28986 5' -50.8 NC_006146.1 + 96821 0.71 0.928784
Target:  5'- uCCCU---GGUGGGGACgggCGGGCagguUGg -3'
miRNA:   3'- -GGGAuuuUCAUCCCUGa--GUCCGgu--AC- -5'
28986 5' -50.8 NC_006146.1 + 17405 1.1 0.008268
Target:  5'- cCCCUAAAAGUAGGGACUCAGGCCAUGc -3'
miRNA:   3'- -GGGAUUUUCAUCCCUGAGUCCGGUAC- -5'
28986 5' -50.8 NC_006146.1 + 101958 0.69 0.960412
Target:  5'- cCCCUGGc--UAGGGGCUCcGGGCUcUGg -3'
miRNA:   3'- -GGGAUUuucAUCCCUGAG-UCCGGuAC- -5'
28986 5' -50.8 NC_006146.1 + 20483 1.1 0.008268
Target:  5'- cCCCUAAAAGUAGGGACUCAGGCCAUGc -3'
miRNA:   3'- -GGGAUUUUCAUCCCUGAGUCCGGUAC- -5'
28986 5' -50.8 NC_006146.1 + 149940 0.71 0.917487
Target:  5'- gCCCUcgGGGUugAGGGGCgccCAGGCguUGg -3'
miRNA:   3'- -GGGAuuUUCA--UCCCUGa--GUCCGguAC- -5'
28986 5' -50.8 NC_006146.1 + 126004 0.69 0.970379
Target:  5'- gCUUGGGAGUGGGGGCggUGGGCUu-- -3'
miRNA:   3'- gGGAUUUUCAUCCCUGa-GUCCGGuac -5'
28986 5' -50.8 NC_006146.1 + 74694 0.68 0.98258
Target:  5'- uUCUUGAGAGaacagGGGGGCUUacgcucaGGGCCAg- -3'
miRNA:   3'- -GGGAUUUUCa----UCCCUGAG-------UCCGGUac -5'
28986 5' -50.8 NC_006146.1 + 23561 1.1 0.008268
Target:  5'- cCCCUAAAAGUAGGGACUCAGGCCAUGc -3'
miRNA:   3'- -GGGAUUUUCAUCCCUGAGUCCGGUAC- -5'
28986 5' -50.8 NC_006146.1 + 97848 0.76 0.683487
Target:  5'- aCCUGGAGGaGGGGGCcgccgacccCGGGCCGUGg -3'
miRNA:   3'- gGGAUUUUCaUCCCUGa--------GUCCGGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.