Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28987 | 3' | -54.6 | NC_006146.1 | + | 116891 | 0.66 | 0.938957 |
Target: 5'- aGGCGCCAccuGGugccGGCCCugAGGGAa---- -3' miRNA: 3'- -UCGCGGU---CU----UCGGGugUCUCUacauu -5' |
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28987 | 3' | -54.6 | NC_006146.1 | + | 128875 | 0.66 | 0.938957 |
Target: 5'- cGGCGUgAGcccGGGCCCAgAGGGA-GUAGc -3' miRNA: 3'- -UCGCGgUC---UUCGGGUgUCUCUaCAUU- -5' |
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28987 | 3' | -54.6 | NC_006146.1 | + | 75256 | 0.66 | 0.933959 |
Target: 5'- cGgGCguGggGUgCACGGGGAUGg-- -3' miRNA: 3'- uCgCGguCuuCGgGUGUCUCUACauu -5' |
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28987 | 3' | -54.6 | NC_006146.1 | + | 109402 | 0.66 | 0.928711 |
Target: 5'- gGGCGgCAGggGCCUccuCGGAGcccugGUGAu -3' miRNA: 3'- -UCGCgGUCuuCGGGu--GUCUCua---CAUU- -5' |
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28987 | 3' | -54.6 | NC_006146.1 | + | 88144 | 0.66 | 0.928711 |
Target: 5'- gGGCGCaaAGggGCuUCAC-GAGGUGUAGa -3' miRNA: 3'- -UCGCGg-UCuuCG-GGUGuCUCUACAUU- -5' |
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28987 | 3' | -54.6 | NC_006146.1 | + | 75459 | 0.66 | 0.923211 |
Target: 5'- uAGCuCCAGAggcaGGCCC-CAGAGAUa--- -3' miRNA: 3'- -UCGcGGUCU----UCGGGuGUCUCUAcauu -5' |
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28987 | 3' | -54.6 | NC_006146.1 | + | 74722 | 0.66 | 0.923211 |
Target: 5'- cAGgGCCAGAaaGGCCCugGaGGGAcccaGUGAg -3' miRNA: 3'- -UCgCGGUCU--UCGGGugU-CUCUa---CAUU- -5' |
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28987 | 3' | -54.6 | NC_006146.1 | + | 162588 | 0.66 | 0.922647 |
Target: 5'- gAGgGUCGGggGCCCuaacagcACAGAGAg---- -3' miRNA: 3'- -UCgCGGUCuuCGGG-------UGUCUCUacauu -5' |
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28987 | 3' | -54.6 | NC_006146.1 | + | 154705 | 0.66 | 0.917459 |
Target: 5'- uGCGcCCAGAugcAGCCCAcCAGGGcgGc-- -3' miRNA: 3'- uCGC-GGUCU---UCGGGU-GUCUCuaCauu -5' |
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28987 | 3' | -54.6 | NC_006146.1 | + | 65824 | 0.67 | 0.905206 |
Target: 5'- uGCGCCAGGcgcucgAGCCCuuugaggaccAUGGAcGAUGUGAc -3' miRNA: 3'- uCGCGGUCU------UCGGG----------UGUCU-CUACAUU- -5' |
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28987 | 3' | -54.6 | NC_006146.1 | + | 49258 | 0.67 | 0.898708 |
Target: 5'- cAGgGCCGGuAGCCCccugUAGAGGUGg-- -3' miRNA: 3'- -UCgCGGUCuUCGGGu---GUCUCUACauu -5' |
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28987 | 3' | -54.6 | NC_006146.1 | + | 14178 | 0.67 | 0.877767 |
Target: 5'- uGCGCCAGGcuggacccccggAGCCUggACGGGGAggcgGUGg -3' miRNA: 3'- uCGCGGUCU------------UCGGG--UGUCUCUa---CAUu -5' |
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28987 | 3' | -54.6 | NC_006146.1 | + | 54997 | 0.67 | 0.877767 |
Target: 5'- gGGUgGCCGGAAGCCCcccggGCGG-GAUGg-- -3' miRNA: 3'- -UCG-CGGUCUUCGGG-----UGUCuCUACauu -5' |
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28987 | 3' | -54.6 | NC_006146.1 | + | 101925 | 0.68 | 0.870319 |
Target: 5'- uGCGCCGGuGG-CCGCGGGGGcgGUGAc -3' miRNA: 3'- uCGCGGUCuUCgGGUGUCUCUa-CAUU- -5' |
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28987 | 3' | -54.6 | NC_006146.1 | + | 127072 | 0.68 | 0.868802 |
Target: 5'- cGGCGCgGGAAGCCgaaagggccaggGCGGAGcgGUGGg -3' miRNA: 3'- -UCGCGgUCUUCGGg-----------UGUCUCuaCAUU- -5' |
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28987 | 3' | -54.6 | NC_006146.1 | + | 85646 | 0.68 | 0.854755 |
Target: 5'- aGGgGCUGGuuGGCCCACGGGGAcccugGUGGa -3' miRNA: 3'- -UCgCGGUCu-UCGGGUGUCUCUa----CAUU- -5' |
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28987 | 3' | -54.6 | NC_006146.1 | + | 126084 | 0.68 | 0.854755 |
Target: 5'- gGGCGCCGGcccCCUACAGAGGUcccaGUAu -3' miRNA: 3'- -UCGCGGUCuucGGGUGUCUCUA----CAUu -5' |
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28987 | 3' | -54.6 | NC_006146.1 | + | 167556 | 0.69 | 0.812264 |
Target: 5'- gAG-GCCacguguGGAGGCCCGCGGAGAggccgUGUGu -3' miRNA: 3'- -UCgCGG------UCUUCGGGUGUCUCU-----ACAUu -5' |
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28987 | 3' | -54.6 | NC_006146.1 | + | 169420 | 0.69 | 0.812264 |
Target: 5'- gAG-GCCacguguGGAGGCCCGCGGAGAggccgUGUGu -3' miRNA: 3'- -UCgCGG------UCUUCGGGUGUCUCU-----ACAUu -5' |
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28987 | 3' | -54.6 | NC_006146.1 | + | 170351 | 0.69 | 0.812264 |
Target: 5'- gAG-GCCacguguGGAGGCCCGCGGAGAggccgUGUGu -3' miRNA: 3'- -UCgCGG------UCUUCGGGUGUCUCU-----ACAUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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