Results 1 - 20 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28988 | 3' | -60.1 | NC_006146.1 | + | 161978 | 0.66 | 0.823525 |
Target: 5'- -aUCCACCGUgGa-GCCGGuCUCCcacggggcguuGCCu -3' miRNA: 3'- ggAGGUGGCAgUagCGGCC-GAGG-----------CGG- -5' |
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28988 | 3' | -60.1 | NC_006146.1 | + | 135407 | 0.66 | 0.790002 |
Target: 5'- gCUCCggcggggggugGCCGggcCGcUGCCGGgUCCGCUg -3' miRNA: 3'- gGAGG-----------UGGCa--GUaGCGGCCgAGGCGG- -5' |
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28988 | 3' | -60.1 | NC_006146.1 | + | 135500 | 0.66 | 0.790002 |
Target: 5'- gCUCCggcggggggugGCCGggcCGcUGCCGGgUCCGCUg -3' miRNA: 3'- gGAGG-----------UGGCa--GUaGCGGCCgAGGCGG- -5' |
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28988 | 3' | -60.1 | NC_006146.1 | + | 67201 | 0.66 | 0.815362 |
Target: 5'- aUUCCACUGgcCGUgGCCGGU--CGCCu -3' miRNA: 3'- gGAGGUGGCa-GUAgCGGCCGagGCGG- -5' |
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28988 | 3' | -60.1 | NC_006146.1 | + | 135314 | 0.66 | 0.790002 |
Target: 5'- gCUCCggcggggggugGCCGggcCGcUGCCGGgUCCGCUg -3' miRNA: 3'- gGAGG-----------UGGCa--GUaGCGGCCgAGGCGG- -5' |
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28988 | 3' | -60.1 | NC_006146.1 | + | 128630 | 0.66 | 0.781282 |
Target: 5'- gCCUCC-CCGgUGUCGCCcaGCUgaGCCa -3' miRNA: 3'- -GGAGGuGGCaGUAGCGGc-CGAggCGG- -5' |
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28988 | 3' | -60.1 | NC_006146.1 | + | 137795 | 0.66 | 0.781282 |
Target: 5'- -gUCCGCCGgaucCGCUucggGGgUCCGCCg -3' miRNA: 3'- ggAGGUGGCaguaGCGG----CCgAGGCGG- -5' |
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28988 | 3' | -60.1 | NC_006146.1 | + | 54558 | 0.66 | 0.790002 |
Target: 5'- gCCUCCuuCCGUCccuUCGCCGcCUUCcCCc -3' miRNA: 3'- -GGAGGu-GGCAGu--AGCGGCcGAGGcGG- -5' |
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28988 | 3' | -60.1 | NC_006146.1 | + | 135128 | 0.66 | 0.790002 |
Target: 5'- gCUCCggcggggggugGCCGggcCGcUGCCGGgUCCGCUg -3' miRNA: 3'- gGAGG-----------UGGCa--GUaGCGGCCgAGGCGG- -5' |
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28988 | 3' | -60.1 | NC_006146.1 | + | 135221 | 0.66 | 0.790002 |
Target: 5'- gCUCCggcggggggugGCCGggcCGcUGCCGGgUCCGCUg -3' miRNA: 3'- gGAGG-----------UGGCa--GUaGCGGCCgAGGCGG- -5' |
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28988 | 3' | -60.1 | NC_006146.1 | + | 52117 | 0.66 | 0.781282 |
Target: 5'- aCCggggCCGcCCGUCggUGCCucggaGGCccCCGCCg -3' miRNA: 3'- -GGa---GGU-GGCAGuaGCGG-----CCGa-GGCGG- -5' |
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28988 | 3' | -60.1 | NC_006146.1 | + | 157722 | 0.66 | 0.781282 |
Target: 5'- aCCgcgaCCACCGUgGUCuGCgCGGCcacggaCUGCCu -3' miRNA: 3'- -GGa---GGUGGCAgUAG-CG-GCCGa-----GGCGG- -5' |
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28988 | 3' | -60.1 | NC_006146.1 | + | 153426 | 0.66 | 0.822716 |
Target: 5'- cCCaCCACCGUCAUguCCGGCaUCUacgggcgGCCc -3' miRNA: 3'- -GGaGGUGGCAGUAgcGGCCG-AGG-------CGG- -5' |
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28988 | 3' | -60.1 | NC_006146.1 | + | 4718 | 0.66 | 0.815362 |
Target: 5'- gCCggCACCGagAUggucacccccCGCUGGC-CCGCCa -3' miRNA: 3'- -GGagGUGGCagUA----------GCGGCCGaGGCGG- -5' |
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28988 | 3' | -60.1 | NC_006146.1 | + | 95114 | 0.66 | 0.80705 |
Target: 5'- cCCUgCAUCGUCugCGUgGGCU-CGCCc -3' miRNA: 3'- -GGAgGUGGCAGuaGCGgCCGAgGCGG- -5' |
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28988 | 3' | -60.1 | NC_006146.1 | + | 4331 | 0.66 | 0.80705 |
Target: 5'- gCUUCaCGCCcagGUCAcgcgcguagUCGCUGGCcgCCGUCa -3' miRNA: 3'- -GGAG-GUGG---CAGU---------AGCGGCCGa-GGCGG- -5' |
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28988 | 3' | -60.1 | NC_006146.1 | + | 142764 | 0.66 | 0.80705 |
Target: 5'- --gCCAauCCG-CA-CGCaGGCUCCGCCu -3' miRNA: 3'- ggaGGU--GGCaGUaGCGgCCGAGGCGG- -5' |
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28988 | 3' | -60.1 | NC_006146.1 | + | 41090 | 0.66 | 0.798594 |
Target: 5'- aCUgCAUCGUCGUC-CgGuGCUCCGUg -3' miRNA: 3'- gGAgGUGGCAGUAGcGgC-CGAGGCGg -5' |
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28988 | 3' | -60.1 | NC_006146.1 | + | 55994 | 0.66 | 0.798594 |
Target: 5'- uCUUCCACCGccccgaGUCGCUGGCcagcguggUgGCCu -3' miRNA: 3'- -GGAGGUGGCag----UAGCGGCCGa-------GgCGG- -5' |
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28988 | 3' | -60.1 | NC_006146.1 | + | 77315 | 0.66 | 0.790002 |
Target: 5'- uCCUCCACCGUCuuugguUUGCaaugggccaGGUUCUuCCc -3' miRNA: 3'- -GGAGGUGGCAGu-----AGCGg--------CCGAGGcGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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