miRNA display CGI


Results 41 - 60 of 150 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28988 3' -60.1 NC_006146.1 + 155066 0.66 0.80705
Target:  5'- gUCUCUAUCca-AUCGCuCGGCUCgaUGCCg -3'
miRNA:   3'- -GGAGGUGGcagUAGCG-GCCGAG--GCGG- -5'
28988 3' -60.1 NC_006146.1 + 137358 0.66 0.790002
Target:  5'- gCUCCggcggggggugGCCGggcCGcUGCCGGgUCCGCUg -3'
miRNA:   3'- gGAGG-----------UGGCa--GUaGCGGCCgAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 156999 0.66 0.798594
Target:  5'- cCUUCCAaaaaGUCA-CGCgCGGCcUCgGCCg -3'
miRNA:   3'- -GGAGGUgg--CAGUaGCG-GCCG-AGgCGG- -5'
28988 3' -60.1 NC_006146.1 + 135686 0.66 0.790002
Target:  5'- gCUCCggcggggggugGCCGggcCGcUGCCGGgUCCGCUg -3'
miRNA:   3'- gGAGG-----------UGGCa--GUaGCGGCCgAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 135871 0.66 0.790002
Target:  5'- gCUCCggcggggggugGCCGggcCGcUGCCGGgUCCGCUg -3'
miRNA:   3'- gGAGG-----------UGGCa--GUaGCGGCCgAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 135778 0.66 0.790002
Target:  5'- gCUCCggcggggggugGCCGggcCGcUGCCGGgUCCGCUg -3'
miRNA:   3'- gGAGG-----------UGGCa--GUaGCGGCCgAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 136150 0.66 0.790002
Target:  5'- gCUCCggcggggggugGCCGggcCGcUGCCGGgUCCGCUg -3'
miRNA:   3'- gGAGG-----------UGGCa--GUaGCGGCCgAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 136429 0.66 0.790002
Target:  5'- gCUCCggcggggggugGCCGggcCGcUGCCGGgUCCGCUg -3'
miRNA:   3'- gGAGG-----------UGGCa--GUaGCGGCCgAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 155746 0.66 0.814538
Target:  5'- gCUUCCACgG-CGUCGCCcgaggaGCUguagaccCCGCCg -3'
miRNA:   3'- -GGAGGUGgCaGUAGCGGc-----CGA-------GGCGG- -5'
28988 3' -60.1 NC_006146.1 + 158183 0.66 0.801993
Target:  5'- gCCUCCuugGCCGUCAggacccccuugucaaUgGCCaGGCUCCu-- -3'
miRNA:   3'- -GGAGG---UGGCAGU---------------AgCGG-CCGAGGcgg -5'
28988 3' -60.1 NC_006146.1 + 137795 0.66 0.781282
Target:  5'- -gUCCGCCGgaucCGCUucggGGgUCCGCCg -3'
miRNA:   3'- ggAGGUGGCaguaGCGG----CCgAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 135407 0.66 0.790002
Target:  5'- gCUCCggcggggggugGCCGggcCGcUGCCGGgUCCGCUg -3'
miRNA:   3'- gGAGG-----------UGGCa--GUaGCGGCCgAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 47191 0.67 0.763489
Target:  5'- cCCgCCGCCGcCccgagCGCCaGGCcccuggccgccUCCGCCa -3'
miRNA:   3'- -GGaGGUGGCaGua---GCGG-CCG-----------AGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 19458 0.67 0.763489
Target:  5'- gCCUCCAggCGUCcUC-CUGGuCUCCGCUc -3'
miRNA:   3'- -GGAGGUg-GCAGuAGcGGCC-GAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 52921 0.67 0.772442
Target:  5'- gCC-CC-CCGggggCGCUGGCcucgUCCGCCg -3'
miRNA:   3'- -GGaGGuGGCaguaGCGGCCG----AGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 68451 0.67 0.763489
Target:  5'- cCCUCCACCG-CGUgGCgGGauCUCuCGUg -3'
miRNA:   3'- -GGAGGUGGCaGUAgCGgCC--GAG-GCGg -5'
28988 3' -60.1 NC_006146.1 + 62008 0.67 0.763489
Target:  5'- aCC-CCGcCCGUgCcgUGCCGGCg-CGCCc -3'
miRNA:   3'- -GGaGGU-GGCA-GuaGCGGCCGagGCGG- -5'
28988 3' -60.1 NC_006146.1 + 130119 0.67 0.75443
Target:  5'- --aCCGCCGUgGUgccgCGCCGGCgCC-CCa -3'
miRNA:   3'- ggaGGUGGCAgUA----GCGGCCGaGGcGG- -5'
28988 3' -60.1 NC_006146.1 + 42494 0.67 0.772442
Target:  5'- cCCUCCccugGCCGUguUCuGCCuggacugcGGCUaCUGCCu -3'
miRNA:   3'- -GGAGG----UGGCAguAG-CGG--------CCGA-GGCGG- -5'
28988 3' -60.1 NC_006146.1 + 22536 0.67 0.763489
Target:  5'- gCCUCCAggCGUCcUC-CUGGuCUCCGCUc -3'
miRNA:   3'- -GGAGGUg-GCAGuAGcGGCC-GAGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.